PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017051.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 436aa    MW: 49549.3 Da    PI: 5.528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017051.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000424467223
                EETTTTEEESSHHHHHHHHHH..T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                +C+dCgk+++++ +   H ++  H
  Do017051.1 44 VCSDCGKPCRSQTEVDLHTKRtgH 67
                8***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.103.9E-1093161No hitNo description
SuperFamilySSF469343.83E-15102170IPR009060UBA-like
CDDcd142901.10E-18116164No hitNo description
PROSITE profilePS5003010.306116157IPR015940Ubiquitin-associated domain
PfamPF006271.6E-4118154IPR015940Ubiquitin-associated domain
SuperFamilySSF1435032.22E-26332420IPR018997PUB domain
PfamPF094091.1E-23349420IPR018997PUB domain
SMARTSM005804.6E-25352415IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAGLSLKCGD CGAQLRSVEE AQAHAEATNH ANFVESTDAV LNLVCSDCGK PCRSQTEVDL  60
HTKRTGHKEF SDKTAEAAKP IDLEAPLKPA SSSEEAMDVD APASASEEPQ EMVVPEVNKE  120
MLADLEAMGF ATAGATRALH FSGNSTIEGA INWLSEHQED ADIDEMPLVP ANSKTEDNKP  180
SLTPEEMRIK AQELRCFDEP FFCIMAWLFF ISLYIAVEQD RARKKKEEEE RRMEREREKE  240
RIRIGKELLE AKRIEEQNER KRMIELRRRE KEEEKAAREK IRQKLEEDKA ERRRKLGLPP  300
EDPTAAKPSA PPPVEEKKSA LPIRPATKAE RMRDCLRNLK QQNKDDDAKV KRAFQTLLTY  360
VGNVAKNPDE EKFRKIRLTN ATFQERVGNL HGGIEFLELC GFEKLDGNEF LFLPRDKRQS  420
FKQRAVPICF SVTVLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550290.0BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815335.10.0chromatin assembly factor 1 subunit A
TrEMBLA0A1E5VAD00.0A0A1E5VAD0_9POAL; Uncharacterized protein
STRINGPavir.Ab01342.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517