PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016753.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 470aa    MW: 51201.8 Da    PI: 4.3126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016753.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.43.6e-6011546714373
        GRAS  14 sgdlelaqalLarlsel..aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                 ++d   a+a+L+rl +l    p+++       + + la yf+++L++r+++      +  ++ +++ +   +++ a+++++e+sP++kf+h+taNqaIl
  Do016753.1 115 AQDSISASAILSRLDDLiaGVPYRNchhaevsSSEHLACYFARGLQSRISG------ALTECHPATASAPGNRMPAYRMLQELSPFIKFAHFTANQAIL 207
                 5566667777777777654233333444445599*****************......3334555555558899************************** PP

        GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
                 ea++ +  vH++D+++++G+QW++L+  La   ++p +l   + ++  ++   + +  + ++ L++fAe+l++pf+++ l+ +  ++ +l++++++  g
  Do016753.1 208 EATADDPGVHVVDLNVGEGVQWASLMSDLARHGGKPFHLTAAVTAD--ADcdAAGAHPTAARWLSEFAESLNLPFQYSSLHLR--SEADLRDFATSCnG 302
                 ******************************8766665665555555..445255555555666****************9666..44556777776658 PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgre 293
                   ++V++    ++      sl   + ++L  vk l+Pk+v+++eqe   +d++ ++F+e f+e l++++a+++sle+ +           vE+e lg+ 
  Do016753.1 303 GPVIVSCDTTDKSYS----SLIRLQMQLLGSVKILQPKLVILIEQElfrMDRSLAPFAEFFCEVLQHFAAMLESLESCFRDGGygACLGLVEKETLGPM 397
                 999999998544443....4444556********************888888999***********************977767788899********* PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 i+++v +        +       +  e  GF++ +ls+++++q k+l   ++ +g+ v +e+g l l+W++rpL+svS+W
  Do016753.1 398 IEDAVRQYVPL----TG-----GAGAELEGFRACELSSFNVAQGKMLAGLFS-RGFGVVHEEGRLALCWNSRPLTSVSVW 467
                 *****988887....22.....3456889**********************9.*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.17576449IPR005202Transcription factor GRAS
PfamPF035141.2E-57115467IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
METMAYPCSP LIPFPTQHEE SSYLLWSPQV VIPLENGNMC DADADPSPDQ QQQDHEFMNM  60
TIQEANCLLL QDDLSNGDPL LTGFDQRLEG QENGSLLAVQ EEFMEESSLS GILEAQDSIS  120
ASAILSRLDD LIAGVPYRNC HHAEVSSSEH LACYFARGLQ SRISGALTEC HPATASAPGN  180
RMPAYRMLQE LSPFIKFAHF TANQAILEAT ADDPGVHVVD LNVGEGVQWA SLMSDLARHG  240
GKPFHLTAAV TADADCDAAG AHPTAARWLS EFAESLNLPF QYSSLHLRSE ADLRDFATSC  300
NGGPVIVSCD TTDKSYSSLI RLQMQLLGSV KILQPKLVIL IEQELFRMDR SLAPFAEFFC  360
EVLQHFAAML ESLESCFRDG GYGACLGLVE KETLGPMIED AVRQYVPLTG GAGAELEGFR  420
ACELSSFNVA QGKMLAGLFS RGFGVVHEEG RLALCWNSRP LTSVSVWSPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2714646954380Protein SCARECROW
5b3h_A2e-2714646953379Protein SCARECROW
5b3h_D2e-2714646953379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139065e-58AL713906.3 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149685e-58AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126205e-58CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A1E5W3L90.0A0A1E5W3L9_9POAL; Nodulation-signaling pathway 2 protein
STRINGPavir.Ca00212.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-36GRAS family protein