PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016714.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 312aa    MW: 32208.2 Da    PI: 10.7333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016714.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31246304259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  Do016714.1 246 SDEYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPATLVVTYEGDHRHD 304
                 69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-6189228IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.3E-32237304IPR003657WRKY domain
PROSITE profilePS5081132.156240306IPR003657WRKY domain
SuperFamilySSF1182902.62E-26242304IPR003657WRKY domain
SMARTSM007744.2E-37245305IPR003657WRKY domain
PfamPF031061.2E-26247303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAVDLMSCGG GGGAYEHLAF QEAAAAGLRS LELLASSLSP RAAGRAESPP LGQIADQAVS  60
RFRRVINLLD RTGHARFRRA PAAVSPAEAA TPPESPRPAP VSQPPVAVAA PQKKSALTLD  120
FTKPSPTKAA PSPAVPAVSA TSTSFLSSVT AGGEGSVSKG CSLAVSSGKP PLPKRKHPTT  180
SAAAAPSAHQ HHHPTESGAA GRCHCSRKPK RSRHGLSRRT VRVPATGSAA PGSQSHQAPA  240
SSDIPSDEYS WRKYGQKPIK GSPYPRGYYR CSSAKGCPAR KHVERAADDP ATLVVTYEGD  300
HRHDAAGAVR AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23232304475Probable WRKY transcription factor 4
2lex_A4e-23232304475Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9720245e-88EU972024.1 Zea mays clone 373577 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972520.11e-143probable WRKY transcription factor 17
TrEMBLA0A1E5VBK60.0A0A1E5VBK6_9POAL; Putative WRKY transcription factor 11
STRINGSi014163m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.18e-49WRKY DNA-binding protein 11