PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016341.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 590aa    MW: 62981.8 Da    PI: 6.2993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016341.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-173786255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Do016341.1 37 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 86
                69****998.**********9...336************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-293694IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753794IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-183795IPR016177DNA-binding domain
SMARTSM003804.0E-3437100IPR001471AP2/ERF domain
PfamPF008472.0E-103786IPR001471AP2/ERF domain
CDDcd000181.41E-163796No hitNo description
PRINTSPR003672.6E-83849IPR001471AP2/ERF domain
PRINTSPR003672.6E-86076IPR001471AP2/ERF domain
CDDcd043354.22E-62301455No hitNo description
Gene3DG3DSA:3.90.960.104.7E-59302460IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
SuperFamilySSF558264.19E-38304457IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
PfamPF040732.0E-24317444IPR007214YbaK/aminoacyl-tRNA synthetase-associated domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0002161Molecular Functionaminoacyl-tRNA editing activity
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MVKGSVQLQD AGVDGAGGNA AAVRQQGAGC GGSGKRQYKG VRMRSWGSWV SEIRAPNQKT  60
RIWLGSYSTA EAAARAYDAA LLCLKGSAAD LNFPVHLPFH IPAAAMSPKS IQRVAAAAAA  120
NASCSPLQAG AAPYSTAAAI NAATTRPCSY GDASSGASSP ETGNAGQYYE AMAHDDVDMT  180
GDADLAALAD IEAFFQSPKC MEYAMMDPCS SFFAPAPMAT DAINEWEEEV GLHPTRPPPP  240
PPSPVMGYTK DQLLARLQRM AMEIYQIGTR SHTSAPGPTI IEILPSSLIL LGISITVSIW  300
CYCLLQELKI EFTCYDHPVV LTVEEQAKHV GHLGGALSKN LLLKDKKHRF YVVSALAGTK  360
VDMKILSQRL GLGKGGLRMA PEESLLQVLQ VPLGCVTPFA LINESASAVS LLLDRGFESK  420
QSCYFHPLTN DVTIALSSSN LNKFLISIGR QPAYVNLEET PAVGKDSPPD LAYLVPSGVP  480
NTSEQPVENA TPTNVPHQNN VPKETEVKAK PKVQSKGAET SQSKVDRPTN GTSVEKFVND  540
VFDIISPLFL SEALKKLDVK KEEVSAKKEE LSSIIDGLRE RAAPDLESRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vjf_A1e-2531046428180DNA-binding protein, putative
5vxb_A9e-2631046419171ProXp-ala
5vxb_B9e-2631046419171ProXp-ala
5vxb_C9e-2631046419171ProXp-ala
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650280.0EU965028.1 Zea mays clone 283317 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954038.10.0prolyl-tRNA synthetase associated domain-containing protein 1
TrEMBLA0A1E5VFX60.0A0A1E5VFX6_9POAL; Prolyl-tRNA synthetase associated domain-containing protein 1 (Fragment)
STRINGBRADI3G57867.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP841433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.18e-26ERF family protein