PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016300.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 373aa MW: 39689.1 Da PI: 9.0179

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016300.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	229	284	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Do016300.1 229 KARRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 284 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.312	226	286	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-17	226	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-29	226	287	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-26	229	284	IPR006447	Myb domain, plants
Pfam	PF00249	5.3E-7	231	282	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MMARKEADQH QLRALAARVV TDSLRAAASR STAAERAARF EDCVRSLEAE KAKMEVFRRE 60 LPISVHLVAD VIEWLKEELA QHRRPAPSAA PAPELFAPAA AKRRAAPEGG AVKAEADAND 120 KRSWMSSAQL WSCGSHDGST ATAAARPAHK VSDAFMPLSG GLPALARSSD DAAEKPTALP 180 VVPDLTLSSP AIDGACPTAP SATSSAVTDG AAAQRQRQHQ QQQAQQQRKA RRCWSPELHR 240 RFVAALQRLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRASS SDGGDHHQSA 300 AAGLWSGPEQ QYTTSQHSTS QSGSPQGPLQ LTVSSRAMSA TAGDSCDGGD EAEGGRSESY 360 SFGMHHGTKA SSS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MMARKEADQH QLRALAARVV TDSLRAAASR STAAERAARF EDCVRSLEAE KAKMEVFRRE  60
LPISVHLVAD VIEWLKEELA QHRRPAPSAA PAPELFAPAA AKRRAAPEGG AVKAEADAND  120
KRSWMSSAQL WSCGSHDGST ATAAARPAHK VSDAFMPLSG GLPALARSSD DAAEKPTALP  180
VVPDLTLSSP AIDGACPTAP SATSSAVTDG AAAQRQRQHQ QQQAQQQRKA RRCWSPELHR  240
RFVAALQRLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRASS SDGGDHHQSA  300
AAGLWSGPEQ QYTTSQHSTS QSGSPQGPLQ LTVSSRAMSA TAGDSCDGGD EAEGGRSESY  360
SFGMHHGTKA SSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-13	229	282	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-13	229	282	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-13	229	282	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-13	229	282	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963026.1	1e-178	transcription factor HHO3
TrEMBL	A0A1E5VCU6	0.0	A0A1E5VCU6_9POAL; Myb family transcription factor EFM
STRING	Pavir.J13382.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5582	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	8e-42	G2-like family protein