PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WRKY

Protein Properties

Length: 349aa MW: 36658.7 Da PI: 6.5045

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016212.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.1e-31	155	211	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++k++++prsYY+Ct ++C +kk+ve+s++dp+++++tYeg H h Do016212.1 155 SDGYKWRKYGQKSIKNNPHPRSYYKCTGSRCGAKKHVEKSTDDPEMLIVTYEGPHLH 211 7******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-29	151	212	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-26	152	213	IPR003657	WRKY domain
SMART	SM00774	1.3E-34	154	213	IPR003657	WRKY domain
PROSITE profile	PS50811	27.37	155	214	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	156	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGDVLHPQAG AGDVALWPGE LDEQLIAELL SDDSLLLGAL HQQQVLPGGG DSSEHCTRDK 60 ADAPAPCDSG GGGGAAAEQE EVLPRPEAVS RALSSVYTGP TIRDIEKALS TSRPYPSWSS 120 RRYSPMHLGR FGAASRAPES KYTTKVRSCG GKTPSDGYKW RKYGQKSIKN NPHPRSYYKC 180 TGSRCGAKKH VEKSTDDPEM LIVTYEGPHL HGPQPLFPRR QWAFVDLSGA GAAAAAKTKQ 240 ARTPSPAASS AAARASDDGG GGRPANDQEM AYCDAEAAAV LPGNGRAEDA VAHRHLSLAA 300 TADSCDDGST ASVPAPRAAT VVLACDSPPT TWSCPDFPFA WSPEALLLL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGDVLHPQAG AGDVALWPGE LDEQLIAELL SDDSLLLGAL HQQQVLPGGG DSSEHCTRDK  60
ADAPAPCDSG GGGGAAAEQE EVLPRPEAVS RALSSVYTGP TIRDIEKALS TSRPYPSWSS  120
RRYSPMHLGR FGAASRAPES KYTTKVRSCG GKTPSDGYKW RKYGQKSIKN NPHPRSYYKC  180
TGSRCGAKKH VEKSTDDPEM LIVTYEGPHL HGPQPLFPRR QWAFVDLSGA GAAAAAKTKQ  240
ARTPSPAASS AAARASDDGG GGRPANDQEM AYCDAEAAAV LPGNGRAEDA VAHRHLSLAA  300
TADSCDDGST ASVPAPRAAT VVLACDSPPT TWSCPDFPFA WSPEALLLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-20	156	211	19	74	Probable WRKY transcription factor 4
2lex_A	2e-20	156	211	19	74	Probable WRKY transcription factor 4
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Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016212.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970545.1	1e-156	WRKY transcription factor WRKY24 isoform X1
TrEMBL	A0A1E5UIZ9	0.0	A0A1E5UIZ9_9POAL; Uncharacterized protein
STRING	Sb03g039550.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13144	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	4e-29	WRKY DNA-binding protein 49