PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016171.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 874aa    MW: 97995.4 Da    PI: 7.7068
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016171.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.32.8e-53361485117
        CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
                 k+rwlk++e+++iL+n+e ++++++++++p+sgs++L+nr+++ryfr+DG++w+kkk+gkt++E+he+LKv+++e+l+cyYa++ +nptfqrr+yw+L+
  Do016171.1  36 KTRWLKPQEVLQILQNHELFTISHKPPQKPPSGSWFLFNRRVLRYFRNDGFEWQKKKNGKTINEAHERLKVDNMEALNCYYARGGNNPTFQRRIYWMLD 134
                 89************************************************************************************************* PP

        CG-1 104 eelekivlvhylev 117
                  ++e+ivlvhy++v
  Do016171.1 135 PAYEHIVLVHYRDV 148
                 ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.23128154IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-6631149IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4836148IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-4331416IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.19E-11332414IPR014756Immunoglobulin E-set
CDDcd002041.49E-8504586No hitNo description
Gene3DG3DSA:1.25.40.203.4E-14541634IPR020683Ankyrin repeat-containing domain
PfamPF136378.3E-7542590No hitNo description
SuperFamilySSF484033.11E-13542630IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.982542601IPR020683Ankyrin repeat-containing domain
SMARTSM002481.4E-4569598IPR002110Ankyrin repeat
PROSITE profilePS5008811.167569601IPR002110Ankyrin repeat
SMARTSM00015350690712IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.2E-7692783IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.011732754IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.474733762IPR000048IQ motif, EF-hand binding site
PfamPF006120.014734753IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0065755777IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377756784IPR000048IQ motif, EF-hand binding site
PfamPF006120.0046757777IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MGRRMGKLVW IVLSANFAYG FTVSGLDIQK LQQVVKTRWL KPQEVLQILQ NHELFTISHK  60
PPQKPPSGSW FLFNRRVLRY FRNDGFEWQK KKNGKTINEA HERLKVDNME ALNCYYARGG  120
NNPTFQRRIY WMLDPAYEHI VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHNSPG  180
GTSDLILPCP NSFSPGSAEE VSSRTVTINN ETNSTGGSDF IQHKEALRKL KMQLSLEDKE  240
DSYVIAEEVP SNNEHVIFHG IQNEEPDNCT NFEDIFNGLE FSGDHTKETG THPCPSAIDV  300
LKNSDTWLEE DQLEAFLHPA SMIPTENQWF QIHEVSPELA FSSESTKVIV IGDFICNPSL  360
SSWAMLFGDV KVPVEIIRQG VIRCHTPCLN AGKVTMCLID GNGEPCSEAR EFEFLEKPTK  420
SMINGNRIPC SEAQDIKAHQ TPTKSNDELL LLLNYVQILF DGHGCEVFSK FSPQLTYPGC  480
GFLVNQMDII KKTYGQVDPE KTVNSVMEVL LNDKLKQWLS SKCEQNNDGD HLLPKQYHGV  540
THTIAALGYD LALKPLLSSG VPINFRDANG WTALHWAARF GREDMVVALL NAGAAAGALS  600
HPTSEDPAAK TPASIALAYG FKGLSAFLSE AQLTTHLDSI ESKENGKCKA NGSGDGIRSA  660
VDRISDKSTH VHGGTDDQLA LKDSLGAVRN AVQAAARIQA VYRVFSFKKK QEMALQNSCL  720
SVHDTVAVSH GMQEKAALSI QKNFRCWKKR KEFLKLRKNI IKLQARVRAH QERKKYKELL  780
RSVGVLEKVM LRWYRKGVGL RGFNSGAMPI DEEVEEDVAK VFRKLRVETA IDEAVSRVSC  840
IISSPKAMQQ YRRMLQRFQQ AKVNYLSSQE LEIY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971097.10.0calmodulin-binding transcription activator 4
TrEMBLA0A1E5WBW90.0A0A1E5WBW9_9POAL; Calmodulin-binding transcription activator 4
STRINGPavir.Ea03904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-116Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains