PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016089.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 294aa    MW: 31452.5 Da    PI: 10.5844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016089.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
       Do016089.1 122 PWTEEEHRMFLGGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 166
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.863115171IPR017930Myb domain
SuperFamilySSF466892.08E-18116172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-18118170IPR006447Myb domain, plants
SMARTSM007171.1E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11119165IPR009057Homeodomain-like
PfamPF002491.5E-11122166IPR001005SANT/Myb domain
CDDcd001671.68E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG HKGHENSIST SNNSSSSTSC GGLRLFGVQL QVGSPPLKKC  60
LSMECLSPAA YYGAAASSSL SPSVSSSSSS LVSIEENAER VSNGYMSDGI MGRVQERKKG  120
VPWTEEEHRM FLGGLEKLGK GDWRGISRHF VTTRTPTQVA SHAQKYFLRQ NSLTHKKRRS  180
SLFDAVEGAK RAAMLRTASV SELKFPSISP GSIDARTKGA VVVPPRLNLM SSTSPYAAAG  240
GASQSQHPSS LNLMAKPQVQ LQIPDLELKM STSRLSDQPG PSRSTPFFGT IRVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809031.11e-165transcription factor MYBS3-like
TrEMBLA0A1E5VKE20.0A0A1E5VKE2_9POAL; Transcription factor DIVARICATA
STRINGPavir.Ca00821.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-47MYB_related family protein