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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 679aa MW: 75519.2 Da PI: 5.7508 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.1 | 6.8e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s ++ Do015799.1 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-HR 102 79****************************.99**************95334455777**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g++tdWvmheyrl Do015799.1 103 RAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.601 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPVEQPQWI 180 GSSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMYGG FGMQMSAAHE DGKWTQFLSE 240 DAFNATNPFF MNPASSSFPC LPSKVDVALE CARLQHRLSL PPLEVEDFPQ DVSLDTKTSI 300 LRSNPNEVDI LQEFLSVASA SQELINGTSS SYPAEMWPGA GTSSASTHYI NELSSLVELG 360 VKAKEEVDNF YHMGCIGTSA GFASKSVHVD EPVRLDEIAD IEEELIKEEK KQVENLRGVR 420 LHNNDLGEIV VEGDESNPPE CITQYPISDT ADNSGEAGRL TDPTDAGGLD TAPIFSQSQP 480 DDFAIGFDDV NPNTSFDLYE KVDVKHGLLV SRVGAAKTFF HRVEPSKEVS FHLNPLASDV 540 SKAIEKFHFP ISVTTKVTGK VSIFSKFKAL IRDKFLVTKP SSYQRSLGSK ETAAVSELLQ 600 IVLLLLTPKE VTGPTTTEQA EFVKKKAKKV MKPGSGCEGS DAWLVPLSKR SKGISSMFLS 660 GKWTFLTSAL AIRIPGCNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015799.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055106 | 0.0 | BT055106.1 Zea mays full-length cDNA clone ZM_BFb0347B22 mRNA, complete cds. | |||
GenBank | KJ727960 | 0.0 | KJ727960.1 Zea mays clone pUT6069 NAC transcription factor (NAC57) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793498.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793499.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793500.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793501.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793502.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793504.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
Refseq | XP_025793505.1 | 0.0 | uncharacterized protein LOC112874412 isoform X1 | ||||
TrEMBL | A0A1E5VEJ7 | 0.0 | A0A1E5VEJ7_9POAL; NAC domain-containing protein 86 | ||||
STRING | Si034541m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-128 | NAC domain containing protein 28 |