PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015656.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 625aa    MW: 68045.7 Da    PI: 4.2871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015656.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.4e-20141451128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskk 96 
                 +pp +rF+Pt+ elv++yL ++++g++     +i++    ++ PwdL  ++  ++e+e yf ++++ +++ g r+ r  +   g Wk + +  + l+ +
  Do015656.1  14 VPPTYRFRPTQRELVQFYLLPRARGQDPFPGVIIEDDAAGTSLPWDLFeRHGLGSEDEAYFLVRTSDAKRPGARQGRGCDggVGAWKMQSNVVKGLRVG 112
                 5899*********************994442457777778889****723333466799******************65523677**999977777767 PP

         NAM  97 gelvglkk.tLvfykgrapkgektdWvmheyrl 128
                 ge++ ++k  L ++ g+ ++g +  Wvmhey++
  Do015656.1 113 GEKIRCRKsNLNLHMGKGKNGGSVGWVMHEYTI 145
                 7777765527*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-2413161IPR003441NAC domain
PROSITE profilePS5100528.18514162IPR003441NAC domain
PfamPF023652.1E-1315145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSAAAEEEEI LDWVPPTYRF RPTQRELVQF YLLPRARGQD PFPGVIIEDD AAGTSLPWDL  60
FERHGLGSED EAYFLVRTSD AKRPGARQGR GCDGGVGAWK MQSNVVKGLR VGGEKIRCRK  120
SNLNLHMGKG KNGGSVGWVM HEYTIAAPPC PSPVKICHIA FTGHGRKRKR VPDGQEDSHI  180
GHASQRPRVD ATAAGCSCSG VMLDRDSGAV VYASAEEQRS QLVLTEDDVF TQSPLLGSSD  240
FLGFPSAASG NAENYQELEQ QVLSTEEHQV MVPQLMVQQS SMAEQLSSIG ADVQSINCAG  300
QEFWSSIVVG SNSVVTSIRD MAAASGNAEQ YQELEQHVPS TEEQQVMMPQ LMVQQSSMPE  360
QLCAGELEFW SSIGVNVQSN ICADQEFWSS IGVESNSTVP RIGDMAAASS NAEQYQELDQ  420
QVLSTEEQRG MMSKLMVQQS SMPEQLCGGE LEFCCSTRTN VQSNICAEQE VWSSIGTESN  480
SMVPRISDMA GNHQDQQDRW SLSRADVQSN CAVDMAAASG NAEQYPEFEQ QVPSTDEQQA  540
MMPQLMVQQS IMPEQLCAGE LKLRSSIGAE TNSTVPRIGD MAGDHQDQQD LWSLSRADVQ  600
SNCAVPDMAA GAFGGAQWGG YCITC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.10.0uncharacterized protein LOC101779761
TrEMBLA0A1E5VCQ00.0A0A1E5VCQ0_9POAL; Uncharacterized protein
STRINGSi020131m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1787534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-15NAC-domain protein 101