 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do015368.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
NF-YC |
| Protein Properties |
Length: 333aa MW: 36188.2 Da PI: 4.5491 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do015368.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 56.5 | 6.2e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ s ++++++ +++dfl ++v +
Do015368.1 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIQKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 86
5789************************************************************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIQKGVK 60
TVGSSHLKQC IQTYNVYDFL REVVSKVPDP GTSDAIADDK LGKRRKAEED GSEDELKRTR 120
NEAENHTSNG RGRGRGRGRG RRGGRVAWRE VVTTHEQFME NQSSKPASHE QFMENQSSKP 180
AGLKVEIADE VSDATEAKEA TPVSSARASF RNIDLNLDPV DEDDDDEDNE VTVPPQAQLS 240
APATSSVAAN LGLTAPATSS ATANLGLTAP ATSGSAAAAA GPSVLLSMEG AKLKDFLGGW 300
ELPDMNKMDM DPVQFALSLE PRLDEDEDYD NED
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 130 | 139 | RGRGRGRGRG |
| 2 | 130 | 140 | RGRGRGRGRGR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT055482 | 0.0 | BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds. |
| GenBank | EU967616 | 0.0 | EU967616.1 Zea mays clone 304857 dr1-associated corepressor mRNA, complete cds. |
| GenBank | JX428513 | 0.0 | JX428513.1 Zea mays subsp. mays clone pUT3111 CA5P10 CCAAT-HAP5 type transcription factor mRNA, partial cds. |
