 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do015101.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
MYB |
| Protein Properties |
Length: 246aa MW: 27013 Da PI: 6.8751 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do015101.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51 | 3.3e-16 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd+ lv++v +G g W+ ar g+ Rt+k+c++rw++yl
Do015101.1 24 KGPWTMEEDQVLVNYVGAHGEGAWNNLARAAGLSRTGKSCRLRWLNYL 71
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 56.8 | 5e-18 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++
Do015101.1 77 RGNFTAEEEELIVRLQARWGNR-WSRIAKHLP-GRTDNEVKNFWRT 120
89********************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0080086 | Biological Process | stamen filament development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MQSSMDAGAS VQQVLPPEPA AVRKGPWTME EDQVLVNYVG AHGEGAWNNL ARAAGLSRTG 60
KSCRLRWLNY LRPDLRRGNF TAEEEELIVR LQARWGNRWS RIAKHLPGRT DNEVKNFWRT 120
KIEKKHRSKA ASYCSGAVVG GVITDGTCSV DDKSMSTPAS IEDQGSSNSG RTGVTHHYGI 180
VEQKPAISSM DYHQGCYDDD VRGGGGTSAA AVMADFFPPE FLAASGDNFW AIEDFWSTMQ 240
PFHGNS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120986 | 2e-31 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. |
| GenBank | AC120990 | 2e-31 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. |
| GenBank | AP014961 | 2e-31 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 2e-31 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
