PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do014979.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 411aa MW: 43709.9 Da PI: 4.5265

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014979.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.2	2.8e-38	81	179	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l+++ dam++l+y++++ra+dPv G++++i +l++q e ael+++ + Do014979.1 81 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLSPDMCADAMATLIYQSDMRAQDPVGGCYRLIATLERQHELDTAELSAVLH 179 7********************************************************************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.63	80	181	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-36	81	177	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MTSSAAPPAT AAPHASRLHI TTTTTGTGPS TITSPSSHHS PSSARSPHSA SSSPRGSSTG 60 TGGGSGSGGS GGSGSGSTNQ ACAACKYQRR KCNPDCPLAP YFPADQQRRF LNAHRLFGVS 120 NILKTLKRLS PDMCADAMAT LIYQSDMRAQ DPVGGCYRLI ATLERQHELD TAELSAVLHH 180 LALCRQAATA IPPQEGGMAD LDVTSSNQPL LLNAEPEVVD ALYANHEADT AILQTDIHHH 240 DHGDSPQDHG EHAQQQQQLF DYFYYDATAS DDASSKPTID INLDNMQQFD FDDTCAAEKV 300 DLAPEEIGQQ HLDVNCQIDH KDYEIKAAAL VDAFDMRQEL QPVDVNADVD VKAVDVNAGI 360 GVDIKAVDVN ANVDVNVDLQ EEDANNIAAG ESAQMAAESS RCRLGLGFSS F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MTSSAAPPAT AAPHASRLHI TTTTTGTGPS TITSPSSHHS PSSARSPHSA SSSPRGSSTG  60
TGGGSGSGGS GGSGSGSTNQ ACAACKYQRR KCNPDCPLAP YFPADQQRRF LNAHRLFGVS  120
NILKTLKRLS PDMCADAMAT LIYQSDMRAQ DPVGGCYRLI ATLERQHELD TAELSAVLHH  180
LALCRQAATA IPPQEGGMAD LDVTSSNQPL LLNAEPEVVD ALYANHEADT AILQTDIHHH  240
DHGDSPQDHG EHAQQQQQLF DYFYYDATAS DDASSKPTID INLDNMQQFD FDDTCAAEKV  300
DLAPEEIGQQ HLDVNCQIDH KDYEIKAAAL VDAFDMRQEL QPVDVNADVD VKAVDVNAGI  360
GVDIKAVDVN ANVDVNVDLQ EEDANNIAAG ESAQMAAESS RCRLGLGFSS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-24	82	187	12	115	LOB family transfactor Ramosa2.1
5ly0_B	7e-24	82	187	12	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820222.1	0.0	uncharacterized protein LOC112896465
TrEMBL	A0A1E5VM40	0.0	A0A1E5VM40_9POAL; LOB domain-containing protein 22
STRING	Pavir.Fb01201.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-38	LOB domain-containing protein 22