PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 411aa MW: 43709.9 Da PI: 4.5265 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.2 | 2.8e-38 | 81 | 179 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l+++ dam++l+y++++ra+dPv G++++i +l++q e ael+++ + Do014979.1 81 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLSPDMCADAMATLIYQSDMRAQDPVGGCYRLIATLERQHELDTAELSAVLH 179 7********************************************************************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.63 | 80 | 181 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-36 | 81 | 177 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MTSSAAPPAT AAPHASRLHI TTTTTGTGPS TITSPSSHHS PSSARSPHSA SSSPRGSSTG 60 TGGGSGSGGS GGSGSGSTNQ ACAACKYQRR KCNPDCPLAP YFPADQQRRF LNAHRLFGVS 120 NILKTLKRLS PDMCADAMAT LIYQSDMRAQ DPVGGCYRLI ATLERQHELD TAELSAVLHH 180 LALCRQAATA IPPQEGGMAD LDVTSSNQPL LLNAEPEVVD ALYANHEADT AILQTDIHHH 240 DHGDSPQDHG EHAQQQQQLF DYFYYDATAS DDASSKPTID INLDNMQQFD FDDTCAAEKV 300 DLAPEEIGQQ HLDVNCQIDH KDYEIKAAAL VDAFDMRQEL QPVDVNADVD VKAVDVNAGI 360 GVDIKAVDVN ANVDVNVDLQ EEDANNIAAG ESAQMAAESS RCRLGLGFSS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-24 | 82 | 187 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-24 | 82 | 187 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014979.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820222.1 | 0.0 | uncharacterized protein LOC112896465 | ||||
TrEMBL | A0A1E5VM40 | 0.0 | A0A1E5VM40_9POAL; LOB domain-containing protein 22 | ||||
STRING | Pavir.Fb01201.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-38 | LOB domain-containing protein 22 |