PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014866.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 449aa MW: 48361.5 Da PI: 4.3338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014866.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	192	212	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y C+ C+++F++ + +k+H + Do014866.1 192 YACESCSRTFNSYMAMKTHCK 212 89*****************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	40	192	212	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	192	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.87E-5	192	214	No hit	No description
SuperFamily	SSF57667	5.87E-5	417	442	No hit	No description
SMART	SM00355	0.29	422	445	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.198	422	449	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	424	445	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEFKLQHWDD ESDEEVPLAI PLYPNADDHK STETESGLGK LAAPRPAATQ SSSLEETNDP 60 VKLQIDVGGS DDDESDEDYV DSEEGESIDD EDTSDEDDGE SSDEADDANF PMNAEDKNRP 120 AETPLKTTPG KKAKMTTPSK GNNTGSGIGA RSVYVHVATP YPSKQVKKGP LLLKKNAPST 180 SDRLKQPAAA GYACESCSRT FNSYMAMKTH CKIALQDDKG NEDVRVFVKV DGNEILIGTL 240 SVDKYPQYDE SDEEVPLAIP LYPNADDDKS KETKTGAEKP AATQFCKPKN TFEETKDPVK 300 LKADVGGATD DDDSDENSVD SEEGESGDDE DSSDEDGNES SDEDDGEDSL KNAMGKNRPA 360 EAPLRTPLAK KAKIATPSMG NKTGGGSTKK SGYVHVATPY PSSKQVKKTP LIIDSSKQPT 420 GYSCKSCSKT FHSSVGLDTH CKVKHDAHK

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEFKLQHWDD ESDEEVPLAI PLYPNADDHK STETESGLGK LAAPRPAATQ SSSLEETNDP  60
VKLQIDVGGS DDDESDEDYV DSEEGESIDD EDTSDEDDGE SSDEADDANF PMNAEDKNRP  120
AETPLKTTPG KKAKMTTPSK GNNTGSGIGA RSVYVHVATP YPSKQVKKGP LLLKKNAPST  180
SDRLKQPAAA GYACESCSRT FNSYMAMKTH CKIALQDDKG NEDVRVFVKV DGNEILIGTL  240
SVDKYPQYDE SDEEVPLAIP LYPNADDDKS KETKTGAEKP AATQFCKPKN TFEETKDPVK  300
LKADVGGATD DDDSDENSVD SEEGESGDDE DSSDEDGNES SDEDDGEDSL KNAMGKNRPA  360
EAPLRTPLAK KAKIATPSMG NKTGGGSTKK SGYVHVATPY PSSKQVKKTP LIIDSSKQPT  420
GYSCKSCSKT FHSSVGLDTH CKVKHDAHK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014866.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682481.1	5e-94	uncharacterized protein LOC101777617
TrEMBL	A0A1E5W111	0.0	A0A1E5W111_9POAL; Uncharacterized protein (Fragment)
STRING	Si002175m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11173	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-09	histone deacetylase 2C