PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do014727.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 711aa MW: 74322.2 Da PI: 5.9178

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014727.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	272.8	1.1e-83	352	710	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L+++A+a ++g+ a+++Larl+++ p g+p+ R a+y++eAL la+ + +++ ts+ +++ +laa+k fs++sP+l+f+++ta q Do014727.1 352 LDELVAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GHHGACRLTSPLDVALKLAAYKSFSDLSPVLQFTNFTATQ 445 578*************************************************.....6777889999999*********************** PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 a+l++++++ +++H+iDfd++ G+QW+++lq+La R+ + p +++T+++s++s+++ el+ t++++a+fA+ lg+pfefn++ + +++++ e Do014727.1 446 ALLDEIASStaSCIHVIDFDLGVGGQWASFLQELAHRRssggAALPFVKLTAFVSAASHHQLELRLTRDNIAQFAADLGIPFEFNAV---NSDMINPAE 541 999887799******************99866544589************************************8...889999999 PP GRAS 194 Lrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L + +E++aV l + + + +L+ vk+l Pk+++ +++ d+ + +F ++fl++++ ++ l+dsl+a + + + ++k+E++l++ Do014727.1 542 LISTTgDEVVAVVLPVGCSARA---PP----LPVILRSVKQLGPKIIIAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GIDPDSASKIEKFLIQ 632 9666669***99776665...44....556*****************************************887.7888999***** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++i++ v g++ + + Wr+++ +aGF pvp s+ a++qa++ll++v+++g++ve+ l+l+W++ +Lv+vSaWr Do014727.1 633 PRIEDTVLGWGKA-----DKPMAWRSAFAAAGFAPVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR 710 *****9998.....8899**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.889	325	690	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-81	352	710	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MREALFRAER SGAADLVGGG KALFWPEEGK AKALVEPRSV LDCTRSPSPN NSTSTLSSSL 60 GGGAADSTGV AAVSDSSAAA AAAEATKWGA PGEHGGGGKE DWAGGCELPP IPAGLDMGLV 120 GGGDSWDAVL GNAAAAGQDQ TFLNWIIGAA GDLDQPGPPL PVHQHPLLDN AGFGFPAAEP 180 LGFSLDPHLG GVASDMSSPG AVSHTTNSGG GSKASSVFGL FSTESASLQP PPPPVLFHEG 240 IDTKPPLLGA QPPGLLLHQY QHQHQPPPPT TFFMPLPSFA DHNQQSPLLQ PPPKRHQSTG 300 DDLYLRNRAA AAQGLPFPPL HGPAPFQLQP SPPPPHGAMK TTAAEAAQQQ LLDELVAAAK 360 AAEAGNSIGA REILARLNHQ LPPLGKPFLR SASYLKEALL LALAEGHHGA CRLTSPLDVA 420 LKLAAYKSFS DLSPVLQFTN FTATQALLDE IASSTASCIH VIDFDLGVGG QWASFLQELA 480 HRRSSGGAAL PFVKLTAFVS AASHHQLELR LTRDNIAQFA ADLGIPFEFN AVNSDMINPA 540 ELISTTGDEV VAVVLPVGCS ARAPPLPVIL RSVKQLGPKI IIAIDHGGDR ADLPFSQHFL 600 NCFQSCVFLL DSLDAAGIDP DSASKIEKFL IQPRIEDTVL GWGKADKPMA WRSAFAAAGF 660 APVPPSNLAE AQADCLLKRV QVRGFHVEKC GVGLTLYWQR GELVTVSAWR C

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MREALFRAER SGAADLVGGG KALFWPEEGK AKALVEPRSV LDCTRSPSPN NSTSTLSSSL  60
GGGAADSTGV AAVSDSSAAA AAAEATKWGA PGEHGGGGKE DWAGGCELPP IPAGLDMGLV  120
GGGDSWDAVL GNAAAAGQDQ TFLNWIIGAA GDLDQPGPPL PVHQHPLLDN AGFGFPAAEP  180
LGFSLDPHLG GVASDMSSPG AVSHTTNSGG GSKASSVFGL FSTESASLQP PPPPVLFHEG  240
IDTKPPLLGA QPPGLLLHQY QHQHQPPPPT TFFMPLPSFA DHNQQSPLLQ PPPKRHQSTG  300
DDLYLRNRAA AAQGLPFPPL HGPAPFQLQP SPPPPHGAMK TTAAEAAQQQ LLDELVAAAK  360
AAEAGNSIGA REILARLNHQ LPPLGKPFLR SASYLKEALL LALAEGHHGA CRLTSPLDVA  420
LKLAAYKSFS DLSPVLQFTN FTATQALLDE IASSTASCIH VIDFDLGVGG QWASFLQELA  480
HRRSSGGAAL PFVKLTAFVS AASHHQLELR LTRDNIAQFA ADLGIPFEFN AVNSDMINPA  540
ELISTTGDEV VAVVLPVGCS ARAPPLPVIL RSVKQLGPKI IIAIDHGGDR ADLPFSQHFL  600
NCFQSCVFLL DSLDAAGIDP DSASKIEKFL IQPRIEDTVL GWGKADKPMA WRSAFAAAGF  660
APVPPSNLAE AQADCLLKRV QVRGFHVEKC GVGLTLYWQR GELVTVSAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-20	351	710	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014727.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682654.1	0.0	scarecrow-like protein 27
TrEMBL	A0A1E5UXY9	0.0	A0A1E5UXY9_9POAL; Scarecrow-like protein 6
STRING	Si016508m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	2e-81	GRAS family protein