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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do014725.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
WOX |
| Protein Properties |
Length: 265aa MW: 28814.4 Da PI: 7.694 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do014725.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 48.8 | 1.2e-15 | 20 | 80 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++
Do014725.1 20 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 80
89*****************99*************************************997 PP
|
| 2 | Wus_type_Homeobox | 104.9 | 5.3e-34 | 19 | 81 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++
Do014725.1 19 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 81
689**********************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MDSQHGQAHR SGGGEPTAAR SRWAPKPEQI LILESIFNSG MVNPAKDETA RIRRLLERFG 60
AVRDANVFYW FQNRRSRSRR RARQLQQACG AAAQLPTTGV VGTGHYHGFN DNASPFLMNG 120
HSQVRSSMMP TAAPLPSMAE TAPHFFADEV DSGDDLFAIS RQMGLMSRGG DHRCGYTAND 180
ASQLSYQPTG TASIQVFING AVYEVPGAGT PLDLAGTFGR DAMLVHSSGE ILPVNEHGVL 240
MKSLQMGECY YLVGFEINLI SRPAV
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005249 | 1e-106 | AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21. |
| GenBank | AP014964 | 1e-106 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-106 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
