PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014708.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 960aa    MW: 105740 Da    PI: 7.7974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014708.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-19343442198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv++
  Do014708.1 343 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMG 439
                 99**************************555567778***************9989999999***9.********************887.77777877 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  Do014708.1 440 FRK 442
                 776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-31334452IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21340443IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-24341442No hitNo description
SMARTSM010191.5E-22343443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589343444IPR003340B3 DNA binding domain
PfamPF023624.9E-16343442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MAMPGAAKRC MNPPCGAPAT GAGGDWRKGW PLRSGGFALL CDKCGLAYEQ FVFCDIFHQK  60
ESGWRDCSFC GKRLHCGCVA SKNSYDLLDS GGVQCVACMK NSAAQSASGQ VVPKLFPCQN  120
NLRIFGKSDE LLSGRKFEKP PSLMLDSRND DIAIVNKSNH PFMVKSIEAG QSSSVLRQKE  180
IENGSRQIKW EQPTLSIGDM GRPFLTRSQS ALESPQCTQR DDNRDPTTDS TTSESISEAC  240
LSMSLGIANN GNKTEATSTV ERPILSPRTA IAEGRELATA LSPFQHAQRA RHFLTRPPRV  300
GEGAVFDTTK DIFPHLRVAR PPAEGRGRNQ LLPRSNSTIV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP PISQPEGRPL TIQDARGKEW HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ  420
AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG SLLSETLFST ANENLGVVSG  480
YPGFLQSIKG SADLHPSSLY DHHMSSADGD VSWLKADKFG SRPDEGSLQF LQKRSRNIGS  540
KSRRFLMDAE DAMELKLTWE EAQELLRPAP TAKPTIVMIE DYEFEEYDEP PVFAKRSIFT  600
IRATGCFCSA PEELTPKELH SVLQQYEEMR RRKGSYGLKL NVAEMDASSL DALATAAVFG  660
DVGNQGTASV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PACTCNVCMT VRRRFKTLMM  720
RKKQRQSERE EAEASKKVAW VNRDEPEGSN LSRSPQTLDT TRDSSDVTMF DKAADMNKGH  780
IDLNFHPAVR DDHQGQHGVQ QPRPRDTTGL SAENAELKIR LQAMEQQAQL RDALNDALKQ  840
EVERLRIATG EMSKSNEPYN MGMQHVTYSP SFFQLSEQHA VQHHGNIQLP PHFQQPPPNV  900
PSHQMLSHPN SLSDMMQQDS LGRLQGLDIG KGSVAVKSEA EVVVKSEDSS ISAGESNSTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-6033644517126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1711722RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799970.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2S3H4Z00.0A0A2S3H4Z0_9POAL; Uncharacterized protein
STRINGPavir.Bb03754.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-126HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]