PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YB | ||||||||
Protein Properties | Length: 249aa MW: 27288.5 Da PI: 6.2575 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 152.2 | 9.7e-48 | 22 | 104 | 2 | 84 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ Do014624.1 22 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMR 104 89*******************************************************************************97 PP | |||||||
2 | NF-YB | 139.8 | 7e-44 | 120 | 210 | 4 | 94 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +d++lPianv+rimk vlP +akisk a+et+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e Do014624.1 120 HDNLLPIANVGRIMKDVLPPQAKISKRARETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESE 210 6899*************************************************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-44 | 19 | 106 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.06E-34 | 24 | 108 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-26 | 27 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.6E-16 | 55 | 73 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 58 | 74 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.6E-16 | 74 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-40 | 120 | 212 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-32 | 121 | 213 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.0E-23 | 124 | 187 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.6E-16 | 189 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MADHHGQPPG GGGAGPGADE IKEQDRLLPI ANVGRIMKQI LPPNAKISKE AKETMQECVS 60 EFISFVTGEA SDKCHKEKRK TVNGDDVCWA FGALGFDDYV DPMRRASDST SRDGNSELGH 120 DNLLPIANVG RIMKDVLPPQ AKISKRARET IQECATEFVG FVTGEASERC RRERRKTING 180 DDICHAMRSL GLDHYADAMR RYLQRYRESE ELAAALNSGS GGGGGAGIQI DVRAELSIFR 240 GNEQQDRNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-37 | 21 | 208 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-37 | 21 | 208 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014624.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970198 | 1e-128 | EU970198.1 Zea mays clone 342117 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814482.1 | 2e-83 | transcriptional activator hap3-like | ||||
Swissprot | O82248 | 9e-48 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0E0CCP2 | 1e-116 | A0A0E0CCP2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G39560.1 | 1e-116 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 5e-50 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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