PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014557.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 1449aa    MW: 161452 Da    PI: 7.5983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014557.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002513301353122
                  EEET..TTTEEESSHHHHHHHHHH CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                  ++C    C++sFs++ +L  H r 
  Do014557.1 1330 FSCDieGCDMSFSTQQDLALHKRD 1353
                  899999***************985 PP
2zf-C2H210.70.001613851407323
                  ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                  C+  dC+k+F+ +   + H+r+H
  Do014557.1 1385 CSfpDCKKTFKWPWARTEHMRVH 1407
                  7777*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.4E-171758IPR003349JmjN domain
PROSITE profilePS5118314.2981859IPR003349JmjN domain
PfamPF023752.2E-141952IPR003349JmjN domain
SMARTSM005584.5E-32193389IPR003347JmjC domain
PROSITE profilePS5118432.515193389IPR003347JmjC domain
SuperFamilySSF511971.7E-19207335No hitNo description
PfamPF023734.2E-32226337IPR003347JmjC domain
SuperFamilySSF511971.7E-19362385No hitNo description
SMARTSM003559.713301352IPR015880Zinc finger, C2H2-like
SMARTSM003551513531377IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88713531382IPR007087Zinc finger, C2H2
PROSITE patternPS00028013551377IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-913691411No hitNo description
Gene3DG3DSA:3.30.160.602.1E-913801407IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002813831407IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.71813831412IPR007087Zinc finger, C2H2
PROSITE patternPS00028013851407IPR007087Zinc finger, C2H2
SuperFamilySSF576674.27E-814011435No hitNo description
Gene3DG3DSA:3.30.160.603.1E-914081436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.114131439IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.28414131444IPR007087Zinc finger, C2H2
PROSITE patternPS00028014151439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1449 aa     Download sequence    Send to blast
MSPPAVEMPE WLRNLPVAPE YRPTAAEFAD PIAYILKIEP EASRYGICKI VPPLAPPPRE  60
ATVERLKASF AANAAAGGGI YGAAPAPTFP TRLQQVGFSA KNRRPASRRV WESGERYTLE  120
AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPEELDL  180
ERSGGNAALA ARDVGETEWN MRLAPRARGS LLRAMGRDVA GVTTPMLYVA MLYSWFAWHV  240
EDHELHSLNY LHFGKPKTWY GVPRDAMLAF EDAVRVHGYA DDLNAIMAFQ TLNEKTTVLS  300
PEVLLSAGVP CCRLVQNSGE FVITFPGAYH SGFSHGVVAL VLELKISPLN ATMNLFHYPC  360
WTGFNCGEAT NIATPSWLQV AKEAAIRRAS TNCGPMVSHY QLLYELALSF RPRELKNSYG  420
VPRSSRLRDK KKNEGEIMIK ETFVGSVIEN NNFLSILLDK SSCVLIPEIE FPLPSFPTIM  480
APEVTVKQGL IAGPCSISQK KVEDMLAYGD AIDEIKGVEK MSDSQSANAT TSSACNGRKL  540
YETKFGTVNS SAFLLNSEIQ SGLIEKGRSH QGGGLLDQGR LPCVQCGILS YACVAIIQPK  600
EAAVQYVISQ ECMSSSAKHG EIMKSDDTSN WITIVPPQGH SSETDDNTIR NASSAQVSDR  660
CRQLYTSSTH GCTSALGLLA SAYESSDSDE EAEASNNIPN NSENYDAANG VTNIQSPGTS  720
VQHRNTNLHL YEEERDSSAA VSPMKPVENK SIAMTQANME TDMTHLADLG ESLTSYEQWP  780
AYLDLVDDPT ASGAKASLNT GLSTVKGAME PDALTLLKYS KDSCRMHVFC LEHALEAWTQ  840
LQQIGGANIM LLCHPEYPRA ELAAKVIAEE LGMKHAWKDI TFRKATDEEI GRIRLALQDE  900
DAEPTSSDWA VKMGINIYYS AKQSKSPLYS KQVPYNSIIY KAFAQENPDS LTDEERQRSG  960
TTKKKVAGWW CGKNWMSNQV HPLLAHEREE QDHDKVYSKV MFSANSYDRI QEEPSTRSTS  1020
QISRSLSRRI SRRKEGGSVE KSRAKKKRYT ASDIAIFDQP RNFDDPEKHE DGDESDSEDA  1080
QNTHQRQQHE SQNINKKSSS KRQKDDKINN NFYERHNDNG DIDYRLGMDS IEDTTVCDWD  1140
NSLPQGLDVV KVKSGAQLQG SKRKSSKSKA SDDLSNVNKR LQKMSKKVST KKHKNDKTNR  1200
QFQENHKEGN VDFLHEDNGN EATQENWDEV PKQKTDDLKV KSGGKMQSGK KKASKCQASD  1260
GLRNGENEAK FSCDIEVCNR DKATIDNWEE IPKDKADDVK VKSKMQSGKK KVSKHPASDG  1320
LRNGDKGAKF SCDIEGCDMS FSTQQDLALH KRDICPVKGC KKKFFCHKYL LQHRKVHLDE  1380
RPLMCSFPDC KKTFKWPWAR TEHMRVHTGV RPYACTEPGC TQTFRFVSDF SRHKRKTGHS  1440
CDKKKKNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-63104087351Transcription factor jumonji (Jmj) family protein
6ip4_A1e-63104087351Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110311047RRKEGGSVEKSRAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2S3HD450.0A0A2S3HD45_9POAL; Uncharacterized protein
STRINGPavir.Cb01041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-154relative of early flowering 6