PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014466.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 449aa MW: 50155 Da PI: 5.003

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014466.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	43.3	8e-14	90	119	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 + Pk+il+lm+v+gLt+e+v+SHLQkYRl Do014466.1 90 EVGPKKILDLMNVPGLTRENVASHLQKYRL 119 567**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	11.403	1	78	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	1.6E-6	12	40	No hit	No description
SuperFamily	SSF52172	9.15E-13	12	86	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.9E-10	41	86	No hit	No description
SuperFamily	SSF46689	5.73E-8	80	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-14	89	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-11	90	119	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MALADATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVM SIDGETSRVM KGVQHGACDY 60 LLKPVRMKEL RNIWQHVYRK KMHEVKEIEE VGPKKILDLM NVPGLTRENV ASHLQKYRLY 120 LSRLQKQNEE RIMGAARQDF SQKGPSDNLN IRISFQEQPG NGANGFQHNS QKIQTQTNML 180 DPHLEDTKIV VPLKVPDKNG TPVSDVIDPQ NVTSASPLGG VLSFERMPVN QDRKPSENMI 240 LECQSWSGSV PPKQFMQYPK HNHERCDLLG DYSCLPKPDL EHPIGAGHLY APPPLVSMSC 300 SMEGDVRDFS DVKPDLLGCM KSLSPALTCT VDSVSAQLSD SVVTSTNSDQ KFSSVEGLSS 360 TKDCYFDQAR NQAMLLTSEE ASIICGTDLA CLPDDLSSYQ LHGIGLNSID LFQCNDPMIL 420 HGLQNNWYDD PEPSSETMEF PLLDGCLFA

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MALADATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVM SIDGETSRVM KGVQHGACDY  60
LLKPVRMKEL RNIWQHVYRK KMHEVKEIEE VGPKKILDLM NVPGLTRENV ASHLQKYRLY  120
LSRLQKQNEE RIMGAARQDF SQKGPSDNLN IRISFQEQPG NGANGFQHNS QKIQTQTNML  180
DPHLEDTKIV VPLKVPDKNG TPVSDVIDPQ NVTSASPLGG VLSFERMPVN QDRKPSENMI  240
LECQSWSGSV PPKQFMQYPK HNHERCDLLG DYSCLPKPDL EHPIGAGHLY APPPLVSMSC  300
SMEGDVRDFS DVKPDLLGCM KSLSPALTCT VDSVSAQLSD SVVTSTNSDQ KFSSVEGLSS  360
TKDCYFDQAR NQAMLLTSEE ASIICGTDLA CLPDDLSSYQ LHGIGLNSID LFQCNDPMIL  420
HGLQNNWYDD PEPSSETMEF PLLDGCLFA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014466.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974774	0.0	EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817738.1	0.0	two-component response regulator ORR26
Swissprot	Q5N6V8	0.0	ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBL	A0A1E5VJT1	0.0	A0A1E5VJT1_9POAL; Two-component response regulator ORR26
STRING	Pavir.Ea03527.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5900	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	4e-34	response regulator 11

Publications ? help Back to Top
Du L, et al. The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction. Genomics, 2007. 89(6): p. 697-707 [PMID:17408920]