PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 18006.4 Da PI: 7.9929 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 133.2 | 3.2e-41 | 13 | 162 | 6 | 168 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +eq+ yvqCnfC+ il+v vP +k+v+v+CG C+ +lsv+l ++ +a + +++++e +v+ ++s +++ e + + +l Do014360.1 13 LPEQLGYVQCNFCSXILLVGVPCGGglQLKTVAVQCGNCAGILSVTLPQSP---PAFVE-----LPPQVKEPGVDPPPWDSEESSGE----DCRERELA 99 589*******************976225789*************9987654...44444.....46678888888888887654433....33444455 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ p v++PP ++qr Psayn+fikeei+rika +P+i+h+eafs a+knWah+P+i Do014360.1 100 AAGNHAFP---AVNKPPMRKQRTPSAYNCFIKEEIRRIKARDPNITHKEAFSSASKNWAHLPRIQQ 162 56666666...69**************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.1E-43 | 14 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 109 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.0E-5 | 115 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MASAARHPCF GLLPEQLGYV QCNFCSXILL VGVPCGGGLQ LKTVAVQCGN CAGILSVTLP 60 QSPPAFVELP PQVKEPGVDP PPWDSEESSG EDCRERELAA AGNHAFPAVN KPPMRKQRTP 120 SAYNCFIKEE IRRIKARDPN ITHKEAFSSA SKNWAHLPRI QQKEN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014360.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958092.1 | 9e-94 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 8e-52 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A1E5VTU6 | 1e-118 | A0A1E5VTU6_9POAL; Protein YABBY 7 | ||||
STRING | Pavir.Ba00601.1.p | 4e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-35 | YABBY family protein |