PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014284.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 603aa MW: 66469.4 Da PI: 9.0242

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014284.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1e-09	180	208	6	34
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i +Le Do014284.1 180 TIRRLAQNREAARKSRLRKKAYILQLESS 208 5699**********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.2E-5	175	250	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.86E-20	179	231	No hit	No description
Pfam	PF00170	4.0E-7	180	212	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	182	197	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-6	182	207	No hit	No description
SuperFamily	SSF57959	1.21E-5	182	222	No hit	No description
Pfam	PF14144	1.2E-28	259	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MGETSSSTSH SRQQDPSLLG YGFHGVIATS TPANFFDQQG AAYFGELEEA FMHQVTSLRR 60 TQQSATISTA HHGDTKPFPT AATATPTARP PPTLDIFPAW PMRSVHTPKD GSNLTADSTD 120 DSESSSKNNS NHSSDQLEAA ANMAGQFDQV SQQQQQQILH KNMATSSTPK TGKTLDAKQT 180 IRRLAQNREA ARKSRLRKKA YILQLESSKL KLAQMEQDMQ RARSQGLFLG GAPGANTSSG 240 TAMFDVEYAR WLEDHGRRMA DLHGALHAHL PDGDLRAIVD DTLTHHDELF QLKAVAAKSD 300 VFHLITGVWT TPAERCFLWM GGFRPSDLLK TLLPQLDPLT EQQVVGICSL QQSSQQAEEA 360 LSQGLEQLHH SLADTMAGGS LMDDADMSFM GGQMALALGK LANLEGFVIQ ADNLRQQTLH 420 QMHRILTIRQ AARCFLAIGQ YHNRLRALSS LWVSRPREYS SAGTKELLGS SQVQSMTDGL 480 PGGKCFKRNG HPPRYRSSTI LSYTDSFLMY LLTFAYARAS IRKGPNSTID QRGNLPTEFF 540 PKIQGRLMAL WDAIVTMKAT IPVTRKGSII ILMPIRHELT DVTRKAVAAI PVTLDIPIVI 600 FYN

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MGETSSSTSH SRQQDPSLLG YGFHGVIATS TPANFFDQQG AAYFGELEEA FMHQVTSLRR  60
TQQSATISTA HHGDTKPFPT AATATPTARP PPTLDIFPAW PMRSVHTPKD GSNLTADSTD  120
DSESSSKNNS NHSSDQLEAA ANMAGQFDQV SQQQQQQILH KNMATSSTPK TGKTLDAKQT  180
IRRLAQNREA ARKSRLRKKA YILQLESSKL KLAQMEQDMQ RARSQGLFLG GAPGANTSSG  240
TAMFDVEYAR WLEDHGRRMA DLHGALHAHL PDGDLRAIVD DTLTHHDELF QLKAVAAKSD  300
VFHLITGVWT TPAERCFLWM GGFRPSDLLK TLLPQLDPLT EQQVVGICSL QQSSQQAEEA  360
LSQGLEQLHH SLADTMAGGS LMDDADMSFM GGQMALALGK LANLEGFVIQ ADNLRQQTLH  420
QMHRILTIRQ AARCFLAIGQ YHNRLRALSS LWVSRPREYS SAGTKELLGS SQVQSMTDGL  480
PGGKCFKRNG HPPRYRSSTI LSYTDSFLMY LLTFAYARAS IRKGPNSTID QRGNLPTEFF  540
PKIQGRLMAL WDAIVTMKAT IPVTRKGSII ILMPIRHELT DVTRKAVAAI PVTLDIPIVI  600
FYN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014284.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809310.1	0.0	transcription factor TGAL4-like isoform X1
Refseq	XP_025809312.1	0.0	transcription factor TGAL4-like isoform X3
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A1E5W398	0.0	A0A1E5W398_9POAL; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	Sb05g003240.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-122	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]