PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

AP2

Protein Properties

Length: 270aa MW: 29261.8 Da PI: 8.9478

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014254.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.5	5e-11	75	131	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d ++ g krk + g++ t+e+Aaka++ a++k++g Do014254.1 75 SRFHGVTRLKWSGKYEAHLWDSTShvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 131 789****************55558887788888.999999************98 PP
2	AP2	46.9	6.7e-15	176	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e +g +k ++lg f +eeAa+a++ a+ +l+g Do014254.1 176 SSYRGVTRRK-DGKWQARIGRIGEsRG-TKDIYLGIFEIEEEAAEAYDIAAIELRG 229 67***999.9***99645466.8***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.5E-7	75	131	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.47E-11	75	142	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.356	76	141	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-12	76	147	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-9	76	141	IPR001471	AP2/ERF domain
Pfam	PF00847	4.2E-10	176	229	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.64E-16	176	239	IPR016177	DNA-binding domain
SMART	SM00380	7.1E-23	177	243	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-16	177	237	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.859	177	237	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-7	178	189	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-7	219	239	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MATVQRQSPA GPTPPDPPAA AQGGEIAALD KQLTVVVVGG GGEERKPGGS DGAAAGGGGK 60 LVAEALRKHA APRSSRFHGV TRLKWSGKYE AHLWDSTSHV EGRKRKGKHG SYVTEEQAAK 120 AHDLAALKYW GTGPNTKLNF NISDYEKEIE VMMTMSQDKF VAYIRRQSSC FSRGTSSYRG 180 VTRRKDGKWQ ARIGRIGESR GTKDIYLGIF EIEEEAAEAY DIAAIELRGV HTVTNFEISN 240 YCEDGLRKLD GPPEVANLEG PSEVMKLAGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014254.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035529	1e-110	BT035529.1 Zea mays full-length cDNA clone ZM_BFb0068F10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977550.1	1e-152	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q84Z02	3e-62	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A1E5VIB9	0.0	A0A1E5VIB9_9POAL; AP2-like ethylene-responsive transcription factor AIL1
STRING	Si010747m	1e-151	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-51	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]