PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014240.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 596aa    MW: 67969.3 Da    PI: 7.5565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014240.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018347368223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C  Cg +F  + +Lk+H+++H
  Do014240.1 347 RCLECGACFQKPAHLKQHMQSH 368
                 7*******************99 PP
2zf-C2H2241e-07374398123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dC+ s++rk++L+rH+ +H
  Do014240.1 374 FVCPleDCPFSYKRKDHLNRHMLKH 398
                 89*********************99 PP
3zf-C2H211.90.00071405428323
                 ET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                 C+   C+++Fs k n++rH +  H
  Do014240.1 405 CTvdGCDRRFSIKANMQRHVKEfH 428
                 88889***************9988 PP
4zf-C2H215.83.9e-05440464123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + C+   C+k F+  s Lk+H  +H
  Do014240.1 440 FICKeeGCNKAFKYLSKLKKHEESH 464
                 789999***************9988 PP
5zf-C2H217.61.1e-05531555223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C +sFs+ksnL++H++  H
  Do014240.1 531 KCTfeGCARSFSNKSNLTTHMKAcH 555
                 789999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
PROSITE profilePS513758.7694474IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-44972IPR002885Pentatricopeptide repeat
PfamPF015354.0E-54972IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.5E-450105IPR011990Tetratricopeptide-like helical domain
PfamPF130411.2E-1074122IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.01475109IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.2E-777111IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.429110140IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.807146176IPR002885Pentatricopeptide repeat
PfamPF015350.011149173IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.5E-4209241IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.618212246IPR002885Pentatricopeptide repeat
SMARTSM0035522287309IPR015880Zinc finger, C2H2-like
SMARTSM003550.094346368IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03346373IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-4347364IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576679.24E-11358400No hitNo description
Gene3DG3DSA:3.30.160.607.3E-12365400IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-5374398IPR007087Zinc finger, C2H2
SMARTSM003551.6E-4374398IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141374403IPR007087Zinc finger, C2H2
PROSITE patternPS000280376398IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-7384433No hitNo description
Gene3DG3DSA:3.30.160.602.1E-8401430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027403428IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512403433IPR007087Zinc finger, C2H2
PROSITE patternPS000280405428IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-7436464IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201440464IPR007087Zinc finger, C2H2
SMARTSM003550.0087440464IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280442464IPR007087Zinc finger, C2H2
SMARTSM003558.2472497IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280474497IPR007087Zinc finger, C2H2
SMARTSM0035518500521IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.33E-9515572No hitNo description
SMARTSM003550.0066530555IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.383530560IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-7531556IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280532555IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-5559582IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.8561587IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787561587IPR007087Zinc finger, C2H2
PROSITE patternPS000280563587IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVMEGHRPTH VTIVGVLSAC ADIGALDLGR VIHGYGSKCN ASTNIIVTNA LIDMYAKSGR  60
IEMAFSLFEE VQLKDAFTWT TMISSFTVQG DGRKALELFW DMLRSGVVPN SVTFISVLSA  120
CSHAGLIEEG TELFGTMREI YNIDPQLEHY GCMIDLLGRG GLLEEAEALI ADMNVEPDIV  180
MWRSILSACL VHRNDRLAEI AGKEIIKREP GDDGVYVILW NMYASSNKWR EAREMRQQML  240
TRKIFKKPGC SWIEVDGVVH EFLMCSGDEI DGDASVGQKS FKDIRRYKCE FCTVVRSKKC  300
LIQAHMVAHH KCVLFKVFPK IYLQDELSKS EIYNSDGEKI VCEEENRCLE CGACFQKPAH  360
LKQHMQSHSN ERLFVCPLED CPFSYKRKDH LNRHMLKHQG KLFGCTVDGC DRRFSIKANM  420
QRHVKEFHED ENVTKGNQQF ICKEEGCNKA FKYLSKLKKH EESHVKLNYM EVVCCEPGCM  480
KMFTNVECLR AHNQSCHQHV QCEICGEKHL KKNIKRHLQA HDEFPSGERM KCTFEGCARS  540
FSNKSNLTTH MKACHDQLKP FTCRVAGCGK AFTYKHVRDN HENSSAHVYI EVSPTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-33124412335PLS9-PPR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-98TF3A_ARATH; Transcription factor IIIA
TrEMBLK3Z0X60.0K3Z0X6_SETIT; Uncharacterized protein
STRINGSi020193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-101transcription factor IIIA