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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do013815.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
NAC |
| Protein Properties |
Length: 127aa MW: 14437.3 Da PI: 10.954 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do013815.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 101.8 | 9.2e-32 | 17 | 93 | 55 | 129 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
+++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v ++ +g l+g++ktLvfy+grap+g+ktdW+mheyrle
Do013815.1 17 KSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGRDKAVRDSkhGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 93
469************************************98777888****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 127 aa
Download sequence Send
to blast |
MSSATLISTA LSHGIFKSDW YFFSYKDRKY PTGTRTNRAT LTGFWKATGR DKAVRDSKHG 60
GGLIGMRKTL VFYTGRAPNG RKTDWIMHEY RLETDENAAP QARPSRHMSL TSHSKHRCVH 120
VHALHSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-25 | 17 | 92 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-25 | 17 | 92 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-25 | 17 | 92 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-25 | 17 | 92 | 70 | 142 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swm_B | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swm_C | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swm_D | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swp_A | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swp_B | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swp_C | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3swp_D | 2e-25 | 17 | 92 | 73 | 145 | NAC domain-containing protein 19 |
| 3ulx_A | 2e-25 | 19 | 92 | 70 | 140 | Stress-induced transcription factor NAC1 |
| 4dul_A | 1e-25 | 17 | 92 | 70 | 142 | NAC domain-containing protein 19 |
| 4dul_B | 1e-25 | 17 | 92 | 70 | 142 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075086 | 1e-116 | KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds. |
