PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013752.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7187.49 Da    PI: 11.4504
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013752.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-261160251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rie+   rqv +skRr+g+lKKA+ELS LCdaeva+++fs+ gklyey+s
  Do013752.1 11 RIEDRVSRQVRLSKRRAGLLKKASELSLLCDAEVALLVFSPAGKLYEYAS 60
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.52262IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-25424IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-24461IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-252439IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-253960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MPRRGVVPLR RIEDRVSRQV RLSKRRAGLL KKASELSLLC DAEVALLVFS PAGKLYEYAS  60
NRF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848191e-72KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817550.18e-30MADS-box transcription factor 51-like isoform X1
RefseqXP_025817551.18e-30MADS-box transcription factor 51-like isoform X1
SwissprotQ9XJ615e-27MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A1E5UNI45e-36A0A1E5UNI4_9POAL; Uncharacterized protein
STRINGTRIUR3_30872-P13e-28(Triticum urartu)
STRINGGRMZM2G320549_P023e-28(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-23AGAMOUS-like 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]