PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013615.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 680aa    MW: 75413.5 Da    PI: 6.7705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013615.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-061031151426
                 --TTTTT-SS-SS CS
     zf-CCCH  14 tCkyGdrCkFaHg 26 
                  CkyG +C+F+H+
  Do013615.1 103 SCKYGTSCRFSHD 115
                 7***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.38586117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.8E-73324567IPR013785Aldolase-type TIM barrel
CDDcd028012.02E-94328563No hitNo description
SuperFamilySSF513951.31E-64328641No hitNo description
PfamPF012077.1E-54331567IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360412430IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAATAPATDP PNSSPAVTID ASPPPRPTPE ELVARAVAPV KPAFLRPPPV REVPKEEGKA  60
GGGGAVVTGE KKSKRQLKRE RQQEKKSTSH LCIEVGKSGN VDSCKYGTSC RFSHDIDAYL  120
AQKPADLEGT CPFTTLGQLC PYGLTCRFLG THKDNLAPQN QSEGNHERNP LSKDIQKLLW  180
KNKYKFPKAS AQIKLLGLKD GNKNKAEATN DDNPDGICEL NGDDKTESLS SIPVNVEPDP  240
PCKEIDNSEG EPLVVNSVGV EPRPLKKSKV EVDETQNGTG VHDNEAEFED LNLSNGLKVS  300
SNNQSSCRVD LITTPHLREK KIIDFREKLY LAPLTTVGNL PFRRLCKTLG ADITCGEMAM  360
CTNLLQGQAS EWALLRRHPS EDLFGVQICG PYPDTVARTV ELVDNECSID FIDINMGCPI  420
DIVVNKGAGS SLLTKPMRIK SIVQAASTVT EKPLTVKVRT AFFEGRNRAD SIVSDIYDWG  480
SSAITIHGRS RQQRYSKLAD WDYIYQCAQK APDYLHVIGN GDVFSFTDWN KHVSDCSKIS  540
TCMIARGALI KPWLFTEIKE QRHWDITSGE RLNILKDFVH FGLEHWGCDS KGVETTRHFL  600
LEWLSYTCRY IPVGLLDVIP QRLNWRPPSY YGRDDLETLM ASDSAADWIR ISEMLLGKVP  660
EGFTFAPKHK SNAYDRAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2832557227266tRNA-dihydrouridine synthase B
6ei9_B3e-2832557227266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992620.0KM399262.1 Setaria italica FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824565.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A1E5VNX20.0A0A1E5VNX2_9POAL; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGSi009538m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]