PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do013429.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 546aa MW: 58473.4 Da PI: 6.7168

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013429.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.7e-21	126	240	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +Wt+ +v++Li+++ +++++ + + +kk++W++vs++m+e+ +++sp+qC++k+++lnkryk++ + +++ Do013429.1 126 KWTDAMVRLLITVVYNVGDDGEGVAaaggkaakagssahghghghghaaaaqqQKKGKWKSVSRAMMEKTYTVSPQQCEDKFNDLNKRYKRVVDLLGRG 224 7**********9966666664222334455566666777777777777777*****************************************999 PP trihelix 72 .tsessstcpyfdqle 86 +++++++ +++d ++ Do013429.1 225 rACRVVENPALLDAID 240 6799999999998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.3E-18	124	266	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MERGDGGGGG MAPRGGGGVG SAAMLGLDMH LAPQQMHPAA AFQHQPQADN HHGGFQLQQP 60 APVRHQQPPS SFSPYSNTSS SRVVVSASGV GHDDDMVGNG KAGVMMQQQQ QQQQMAAAGC 120 PWTRMKWTDA MVRLLITVVY NVGDDGEGVA AAGGKAAKAG SSAHGHGHGH GHAAAAQQQK 180 KGKWKSVSRA MMEKTYTVSP QQCEDKFNDL NKRYKRVVDL LGRGRACRVV ENPALLDAID 240 DLSPKAKDEA RKLLSSKHLF FPEMCAYHNG PGSHAPPHAA PGEAAACLHH PPPGPAASSA 300 ARHAPQLAAP SPAGMKESSA DVADDDDDSD DALSNNGDDD EDEYGDDEED GHMYPIHAIH 360 HHHHQHNGGG RGKRGRGEDS GGAAEDNEDD PHAGGKRARA AAAAAAEPSA MVLQLRSELA 420 AATAASADPQ QARCWVRRRA VEVEEQQVAL ESRAYELERQ RLKWERFRGN KERDMERARL 480 ENDRLRIESR RMLLMLRHKD IELDMAEANS SSVDHHPGAG ASPLDAHHHN HHQPIGSSPS 540 TAGHPN

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MERGDGGGGG MAPRGGGGVG SAAMLGLDMH LAPQQMHPAA AFQHQPQADN HHGGFQLQQP  60
APVRHQQPPS SFSPYSNTSS SRVVVSASGV GHDDDMVGNG KAGVMMQQQQ QQQQMAAAGC  120
PWTRMKWTDA MVRLLITVVY NVGDDGEGVA AAGGKAAKAG SSAHGHGHGH GHAAAAQQQK  180
KGKWKSVSRA MMEKTYTVSP QQCEDKFNDL NKRYKRVVDL LGRGRACRVV ENPALLDAID  240
DLSPKAKDEA RKLLSSKHLF FPEMCAYHNG PGSHAPPHAA PGEAAACLHH PPPGPAASSA  300
ARHAPQLAAP SPAGMKESSA DVADDDDDSD DALSNNGDDD EDEYGDDEED GHMYPIHAIH  360
HHHHQHNGGG RGKRGRGEDS GGAAEDNEDD PHAGGKRARA AAAAAAEPSA MVLQLRSELA  420
AATAASADPQ QARCWVRRRA VEVEEQQVAL ESRAYELERQ RLKWERFRGN KERDMERARL  480
ENDRLRIESR RMLLMLRHKD IELDMAEANS SSVDHHPGAG ASPLDAHHHN HHQPIGSSPS  540
TAGHPN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013429.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289028	2e-98	AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBank	AP003414	2e-98	AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBank	AP003921	2e-98	AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBank	AP014957	2e-98	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682182.1	0.0	uncharacterized protein LOC101752474
TrEMBL	A0A1E5W1V2	0.0	A0A1E5W1V2_9POAL; Uncharacterized protein
STRING	GRMZM2G305362_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-46	sequence-specific DNA binding transcription factors