PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013407.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 351aa    MW: 39500.3 Da    PI: 6.8673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013407.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-51371672128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                  pGfrFhPtdeel+++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+    
  Do013407.1  37 LPGFRFHPTDEELITFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAatgr 134
                 69***************************.89***************556667899**************************************98777 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Do013407.1 135 AGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 167
                 7777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.26436196IPR003441NAC domain
SuperFamilySSF1019414.58E-5536196IPR003441NAC domain
PfamPF023653.0E-2538167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVAKELAREV TISMDKVKSD GEALIAVGDE EEDDVVLPGF RFHPTDEELI TFYLRRKVAR  60
KPLSIEIIKE MDIYKHDPWD LPKASTAGGE KEWYFFCLRG RKYRNSIRPN RVTGSGFWKA  120
TGIDRPIYSA ATGRAGDSIG LKKSLVFYRG SAGKGTKTEW MMHEFRLPPA TAAAATNASP  180
SMQEAEVWTI CRIFKRNITY KRQQPQQVWR QPMATSNALP PADSSSNTGS FESDGGDEYM  240
NCQPAAAPSV PRQQHHFSNQ VNMLNGGGSG SGSFFRESLH SQQFQGQWFN SLPAQEIEQK  300
PQLNSSAMTI SFHQNDQSLA VNDCCKDGYW DEIARFMEVN DPTAFYDCRY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-483819619165NO APICAL MERISTEM PROTEIN
1ut4_B4e-483819619165NO APICAL MERISTEM PROTEIN
1ut7_A4e-483819619165NO APICAL MERISTEM PROTEIN
1ut7_B4e-483819619165NO APICAL MERISTEM PROTEIN
4dul_A4e-483819619165NAC domain-containing protein 19
4dul_B4e-483819619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013407.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555791e-164BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBankHQ8586891e-164HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795725.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1E5ULR50.0A0A1E5ULR5_9POAL; Transcription factor JUNGBRUNNEN 1
STRINGSi036447m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]