PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013360.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 333aa MW: 34981.7 Da PI: 9.0824

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013360.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	67	90	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ F+r+ +L+ H r+ H Do013360.1 67 YLCETCGRGFRRHQDLHLHHRRrH 90 56*******************999 PP
2	zf-C2H2	15	7.1e-05	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg +Fs+ +++++H+ t+ Do013360.1 172 HTCDGCGCVFSQLESYVQHQDTC 194 79******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.24	67	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.6	67	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	8.2	111	141	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.829	172	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	172	192	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MRTATMSSSC APTAVPAPEE APPQTSPQVD GAAKKKRRRL PTTTDPEPEV EVVALSPPAL 60 LGWNGWYLCE TCGRGFRRHQ DLHLHHRRRH VVPSDKREAG EVPAAARKRV FVCPEPGCRN 120 HAPSNAMANL SSLKKHFRRR HGRHGLWACG RGSGSGALAV RADDNARGTS GHTCDGCGCV 180 FSQLESYVQH QDTCVARRPR PPDFGGGVVL GLAAAASMPQ QQGQLQAMPA SPSSVKDVIV 240 VSSAMASATA AAAAGVAALG PSLSPTRLPA RPAAAHNLEL QLKPPVQSPP HPPAATSRLD 300 LSLGLGGARD DDAAAAELMV EAAREQLLLA MAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KKKRRR
2	35	39	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954691.1	5e-80	protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	2e-45	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1E5VMN2	0.0	A0A1E5VMN2_9POAL; Protein indeterminate-domain 14
STRING	OMERI09G13530.1	1e-58	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	9e-35	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]