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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16261.4 Da PI: 6.133 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.8e-29 | 2 | 89 | 14 | 100 |
DUF260 14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+Cv+ap f+++q +++fa++hk+FGasn +kl+ +lp++ +++a+ ++ yeA+ r+rdPvyG+v++i++lqqq+ +l+a+la+lk++ Do013351.1 2 KGCVFAPSFCHDQgAAHFAAIHKVFGASNASKLIMHLPDNAHSEAAVTISYEAQERLRDPVYGCVAHIFSLQQQVLTLQAQLASLKAQ 89 68***********89********************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.085 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-25 | 2 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MKGCVFAPSF CHDQGAAHFA AIHKVFGASN ASKLIMHLPD NAHSEAAVTI SYEAQERLRD 60 PVYGCVAHIF SLQQQVLTLQ AQLASLKAQA SQGYTKRCNV DPLEHEELFG LQRQGPEVPN 120 GGGVQNDLLC ETLEATGLEE TKPCSGVWKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-20 | 1 | 83 | 23 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-20 | 1 | 83 | 23 | 104 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013351.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648252.1 | 3e-51 | LOB domain-containing protein CRL1-like | ||||
Swissprot | Q5UG13 | 7e-47 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A1E5VVJ7 | 1e-108 | A0A1E5VVJ7_9POAL; LOB domain-containing protein 29 | ||||
STRING | Pavir.J03376.1.p | 2e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-35 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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