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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 700aa MW: 76565.8 Da PI: 6.3298 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k Do013221.1 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 71 789999***********************************************998 PP | |||||||
2 | START | 153.6 | 1.6e-48 | 215 | 439 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a +a++el+++a+a+e++Wvk++ e +n + + + + ++e +r+sg+v+m ++ lv ++d++ +W e ++ ka Do013221.1 215 MATRAMDELIRLAQAGEQVWVKDVhgderETLNVTNYDSL-----FakpggafrppdINVEGSRDSGLVFMSAVGLVDVFMDTN-KWMEFFPgivsKAH 307 57899*******************7655533333333333.....23445589***99**************************.************** PP EEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 81 tlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 t++v+ +g + l m+ el ++p+vp R+f f+Ry++q ++g w+++dvS+d +++ R+++lpSg+li ++sng+skvtwveh++ + Do013221.1 308 TVDVLVNGlggrsESLIMMYEELHIMTPIVPtREFSFLRYCKQIEQGLWAVADVSLDGQRDAH-CGMPSRSRRLPSGCLIADMSNGYSKVTWVEHMEIE 405 *************************************************************98.46667999*************************** PP SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206 lp l+r lv sg+a+ga +w+a+lqr ce+ Do013221.1 406 QTLPiNLLFRNLVLSGAAFGAHRWLAALQRACER 439 ****99**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.97E-20 | 9 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 10 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.783 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-19 | 14 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.5E-18 | 16 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.04E-19 | 16 | 74 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.215 | 205 | 442 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-31 | 207 | 441 | No hit | No description |
CDD | cd08875 | 1.30E-105 | 209 | 438 | No hit | No description |
SMART | SM00234 | 1.2E-35 | 214 | 439 | IPR002913 | START domain |
Pfam | PF01852 | 6.0E-41 | 215 | 439 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.33E-18 | 457 | 692 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MDFGDEPEGS DSQRQRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK 60 FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMREAL RNVICPTCGG PPVADDYFDE 120 QKLRMENARL KEELDRLSSV TSKYLGRPFT QMPPVPPMSV SSLDLSVGGM PGQGLGGGPS 180 LDLDLLSGGS SGYHHPSFHL PTAVSELERP MMAEMATRAM DELIRLAQAG EQVWVKDVHG 240 DERETLNVTN YDSLFAKPGG AFRPPDINVE GSRDSGLVFM SAVGLVDVFM DTNKWMEFFP 300 GIVSKAHTVD VLVNGLGGRS ESLIMMYEEL HIMTPIVPTR EFSFLRYCKQ IEQGLWAVAD 360 VSLDGQRDAH CGMPSRSRRL PSGCLIADMS NGYSKVTWVE HMEIEQTLPI NLLFRNLVLS 420 GAAFGAHRWL AALQRACERF ASLAVLGAPL HDLGGVTPEG KRSMMKLSXR MVSSFCASLS 480 SSPLQRWTLL LGTTDVSIRV STHRSADPGQ PNSVVLSAAI SIWLPVPGDH VFAFVRDENA 540 RSQWDVLSHG NQVQEVSRVP YGSNHGNCIS LLRGLNANQN NMLILQDSCT DASGSLVVYS 600 PIDIPAANVV MSGEDPSAIP LLPSGFAIFP DGQPSSGGAG PSRSASTLAP PPGCVVTIAF 660 QILVSNLPSS RLNAESVATV NSLIGTTVQQ IRAALNCAGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066813 | 0.0 | BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438026.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A1E5WJ53 | 0.0 | A0A1E5WJ53_9POAL; Homeobox-leucine zipper protein ROC8 | ||||
STRING | Sb10g006820.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |