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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 27020.4 Da PI: 6.7797 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 65 | 164 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+++++ Do013045.1 65 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALEAELEAVRA 163 7**********************************************************************************************9998 PP DUF260 100 e 100 e Do013045.1 164 E 164 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.859 | 64 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-40 | 65 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MHQTLGDRGN CWTSTCRERL DEIGKKIKRE PDTSALALAS ASTAPADNRV PRRLGLGGAI 60 NTVIPCAACK LLRRRCAQEC PFAPYFSPHE PHKFAAVHKV FGASNVSKML LEVAEGERAD 120 AASSLVYEAN LRLRDPVYGC MGAISVLQQQ VNALEAELEA VRAEILKHRY RQAGAGASLI 180 DDSHATASFV APAPPAPVHA GDVVSVVEAG QEVAAAGGAP GMSASSAVYV AEAERPSSTT 240 DHYSSLNPSE HAAYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-42 | 65 | 168 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-42 | 65 | 168 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013045.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068699 | 1e-157 | BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds. | |||
GenBank | EU971655 | 1e-157 | EU971655.1 Zea mays clone 368697 LOB domain protein 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 1e-129 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-66 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1E5VHX5 | 0.0 | A0A1E5VHX5_9POAL; LOB domain-containing protein 15 | ||||
STRING | Si004575m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-62 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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