PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012921.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 275aa    MW: 31277.7 Da    PI: 8.6988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012921.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.19.4e-3034137198
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 
                 f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD++ F++++   ++ +l+
  Do012921.1  34 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVIQFERMRGfgMGDRLF 132
                 99***************************9666668889************************************************775435666677 PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 ++ +r
  Do012921.1 133 IGYRR 137
                 66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4029143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-2931136IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-2832124No hitNo description
PfamPF023623.3E-2734138IPR003340B3 DNA binding domain
SMARTSM010191.7E-2234139IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67634138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNHLSQEHPQ AWPWGVAMYT NLHYHHYYEK EHLFEKPLTP SDVGKLNRLV IPKQHAERYF  60
PLSGDSGEKG LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDVIQFE  120
RMRGFGMGDR LFIGYRRRGE NASAAPAPAP AVRVAAPAQS AGGEQQPWSP MCYSTSGSYP  180
TSPANSHAYR HSVDHDHSNM QHAGESQWDK DNRSCSAVSA PSRRLRLFGV NLDCGPGPEP  240
EPETPTAMYG YMHQSPYAPN NWSALQNHQN KRHRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51291383113B3 domain-containing transcription factor NGA1
5os9_B1e-51291383113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012921.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827829.10.0B3 domain-containing protein Os11g0156000-like isoform X1
SwissprotQ53QI01e-125Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A1E5VM200.0A0A1E5VM20_9POAL; B3 domain-containing protein
STRINGSi027632m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]