PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012623.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 361aa    MW: 38657.3 Da    PI: 8.7498
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012623.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32179232255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Do012623.1 179 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 232
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28177232IPR009057Homeodomain-like
SuperFamilySSF466892.51E-15177233IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23179233IPR006447Myb domain, plants
PfamPF002491.9E-7180231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPQAT KPMELGFWKR ALDTTSPVST TTAAAAATTA TTAPSLSFAS  60
SAPTAVGFHH AAAGAHHHHQ VPISHHLGLP FLHHTQPILP EGGGGGGLRD LASMRPIRGI  120
PVYNTSQPLP FLQSHPHHHH HHHPHCYDAI GMGHAGGPRS PKAALRLAGA PAKRGARAPR  180
MRWTTSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTIKTTDHKP  240
ASASSYGQAA AKTIIDIPDD NLFDATNTTS GSESSAQQSN PDGNEHGSSM CALWSNSSIS  300
SRGAWFHDKS IDATPGDIKS FEDVQSQSLD NISDLNSSPF QVAGIFGRSK KPNLDFTLGR  360
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16180234357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16180234458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369111e-116BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268291e-116KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811921.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-44KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1E5VN240.0A0A1E5VN24_9POAL; Putative transcription factor KAN2
STRINGPavir.Ab02797.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-38G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]