 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do012297.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
TCP |
| Protein Properties |
Length: 396aa MW: 41022.3 Da PI: 9.119 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do012297.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 139.8 | 2.1e-43 | 105 | 226 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaksaa.ks 97
ag k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s a ++ss+ +aa++++ ++
Do012297.1 105 AGPKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGATHPSSAsRAAAFHHlPP 203
7889*****************************************************************99999999999999888877788888889* PP
TCP 98 kksqksaasalnlakesrakara 120
++q++ a++l+ ++ ++++ ++
Do012297.1 204 PHAQHEVAAMLAWNHGHHQQHQQ 226
************99977754443 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MDAPSSSTST STNSSRSASE QQQHRQHQAV GHQQHHPFYY AVAAGGGAGA TAAANAAGMP 60
PFMGSLAIVQ QAPAPGAGAG EVRLTQAAPA SGSSGGAEKK AVVPAGPKRP TKDRHTKVEG 120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV 180
SLRSGATHPS SASRAAAFHH LPPPHAQHEV AAMLAWNHGH HQQHQQQFLP PPPQQQAPQD 240
PDAGEFMRKR YRDGADDLFK DGAARQHPED GGGGEAEEHK ARVAPPTAAM WAVAPNSSAA 300
GAFWMQPAWA FGAGAAGSAV QAPLQFMSTR STNNFPGGAT TMDANVGMLA ALNASGSVQH 360
QHQQEQEGQP PEMAQRHRTG AGANGGDAGR GAASPQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063432 | 0.0 | BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds. |
| GenBank | KJ726897 | 0.0 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
