 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do012292.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
TCP |
| Protein Properties |
Length: 409aa MW: 41261.1 Da PI: 6.4052 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do012292.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 129.3 | 3.9e-40 | 101 | 243 | 3 | 129 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaa.ks 97
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a++ + +aa++ a
Do012292.1 101 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-NpaRAAPFPAlAL 198
789*****************************************************************77733333333333222.2353333333233 PP
TCP 98 kksqksaasalnlakesr...............akarararertrek 129
++ +++aa ++++ s + +a r+r re+
Do012292.1 199 HPHHHQAA--PAPHDMSAmmgyhhhllppqqdpSAGDAYMRKRYRED 243
33333333..4444433333344444454444433333344444444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MDHGGGAGGG GGGGAPSSSN SGGATAAAGG ASGGRGGDHH PFYYAGPAAS NSGVPPQQQP 60
SPFGGSLAIT PVPEQAPPSS AAGADKKALV PAAPAAAGPV VAKRPSKDRH TKVDGRGRRI 120
RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAILAA TGTGTIPANY SSLNISIRSG 180
AAAAANPARA APFPALALHP HHHQAAPAPH DMSAMMGYHH HLLPPQQDPS AGDAYMRKRY 240
REDLFKEDDD RQDPNAPKAR EQQAATPPPP PSAAMWAVAP NAAAPSGGFW MLPVSASSAA 300
AARPAEQPMW SFSGGGGGTA TVQAPLQFMS RASYPSNAAG GGGGGGGGMS EPNLGMLAAL 360
NAYNRGSSED QQQHQQPEGE QQHGGDGGGN DEEDGDDSGE ENHGNNSSQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
