PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 346aa MW: 37606.9 Da PI: 6.6595 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.7 | 2.1e-13 | 249 | 335 | 3 | 85 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 k+lt+sdv + gr+vlpkk ae+ +++ + l++ d +W++k+++ ++ks++y+l+ eFvk +gL++gD ++++ + Do012285.1 249 KELTKSDVANVGRIVLPKKDAEASlpPLVQGDPLILQMDDmVLPITWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDALIIYKN 335 899******************99999666666666777774455*******99888888888888.99****************9933 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 6.33E-19 | 246 | 342 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-20 | 246 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-15 | 246 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.4E-6 | 247 | 346 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-10 | 249 | 335 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGQMGGPDGD GAAHPYHHQY HYQALLAAVQ NPNQNLHPAS FPLPFHHYPH PAGPGAPAAA 60 AGPGADTAAS THNAAPHSQP SRGFADWSAS NSAFASVAAQ PTAPPATTNT PFHYNLSQSY 120 ALWTHHYMLN KNAVSYPSYP APHEDNPHPL RHTHIQDKDS GSGFDSFTTM SLGPNICAHM 180 SPMEGSISAK EAESSEDLPT VVRNSDEMDT RHNDEVHCDT VATLPESEPS HKSCTTKFNS 240 GEYQVILRKE LTKSDVANVG RIVLPKKDAE ASLPPLVQGD PLILQMDDMV LPITWKFKYR 300 FWPNNKSRMY ILEAAGEFVK THGLQAGDAL IIYKNSVPGK FVCKTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 3e-31 | 238 | 335 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 3e-31 | 238 | 335 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012285.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822621.1 | 0.0 | B3 domain-containing protein IDEF1-like isoform X2 | ||||
Swissprot | Q6Z1Z3 | 1e-114 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | A0A1E5VNX5 | 0.0 | A0A1E5VNX5_9POAL; B3 domain-containing protein IDEF1 | ||||
STRING | GRMZM2G125596_P01 | 1e-175 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 1e-30 | B3 family protein |