PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do012245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 32560.2 Da PI: 4.5918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 163 | 187 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+r+N++++ Lr+++Pk + Do012245.1 163 MAERRRRKRLNDRLSMLRSVVPKiS 187 79*********************44 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.607 | 156 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-8 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-7 | 163 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-6 | 163 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.16E-4 | 244 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MELDEQAFLE EILSLRRDAW DCNAMGDFFS PAAVTACTAA MDCSFQDRHQ PPPTVSVLPT 60 FTASYNQPPP PPPHPAAPGF DCLSEVYGAA AAFGGPNAAD YGSEMGFLDV IEPKAPLVEG 120 GLGVCKVEPG LAEGGGAFGA GAAQPATASK KKRVEGMPSK NLMAERRRRK RLNDRLSMLR 180 SVVPKISKEL LERIKLLQEE IDEQQQQQGE TPGVLSVFRE LNPNEMVARN TPKFDVERKE 240 GGETRVEIYC AAKPGLLLST VSTLENLGLD IQQCVVSCFN DFGMHASCSE VLCLCFFLEM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 150 | 170 | KKRVEGMPSKNLMAERRRRKR |
2 | 164 | 171 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do012245.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT023986 | 1e-110 | BT023986.1 Zea mays clone EL01N0413D04 mRNA sequence. | |||
GenBank | BT042911 | 1e-110 | BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds. | |||
GenBank | EU963538 | 1e-110 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812035.1 | 1e-143 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 5e-42 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A1E5VVN4 | 0.0 | A0A1E5VVN4_9POAL; Transcription factor bHLH93 | ||||
STRING | Sb10g030470.1 | 1e-142 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 9e-41 | beta HLH protein 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|