PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012224.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 702aa    MW: 74274.4 Da    PI: 6.3164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012224.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19534630295
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +kvl++sdv+++gr+vlpkk ae h  +++++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++ +++++++
  Do012224.1 534 QKVLKQSDVGSLGRIVLPKKEAEVHlpELQTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDvKSGKYLI 629
                 79*************************999***********7778*******99777777777777.********************..5558887777 PP

                 E CS
          B3  95 k 95 
                 +
  Do012224.1 630 R 630
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-27526636IPR015300DNA-binding pseudobarrel domain
CDDcd100151.15E-32531632No hitNo description
SuperFamilySSF1019361.96E-22532627IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.546533635IPR003340B3 DNA binding domain
SMARTSM010192.0E-18533635IPR003340B3 DNA binding domain
PfamPF023621.1E-15534629IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDASAVSPPP RSQEKPPEHG GDLREAPAEE IAGEAGDDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSSAYTNAAG GAGGGGADAA GERSEPASAG EGFDALDDID QLLDFASLSM  120
PWDSEPPFPE ASMMLEDAMF APPRPVGDGR RDGKAVLEGT GGEEACMDAV AAAGEELPRF  180
FMEWLTSNRE NISAEDLRSI RLRRSTIEAA DARLGGGRQG TMQLLKLILT WVQNHHLQRK  240
RPRDAMDEAA GLHGHGHSQL SSPGANPGYE FPAGGQDMAA GGGTSWMPYQ QPFTPPAYGG  300
DAVYPSAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWPQQ YVPFPGASTG  360
SYPMPPVVPQ PFSPGFGGQY AGAGHPMGPQ RVAGVEASAT KEARKKRMAR QRRLSCLQQQ  420
RSQQLNLGQI QVSVHPQEPS PRSTHSAPVT PSAGGWGFWS AGSQQQVQNP LSKSNSSRAP  480
MQHVPRSPDP EALAAPPAKP APGGARQEES PQSSTASDKR QGVKADTNLR FLLQKVLKQS  540
DVGSLGRIVL PKKEAEVHLP ELQTRDGISI PMEDIGTSRV WNMRYRFWPN NKSRMYLLEN  600
TGDFVRSNEL QEGDFIVIYS DVKSGKYLIR GVKVRPVQEQ GNGSSAAGKH KHGYPGPVKA  660
VGASDDGGAE GTSKPDGACK GRSPQGMRPA CHQGAASMAL SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-385296391111B3 domain-containing transcription factor FUS3
6j9b_D5e-385296391111B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMZEREGPRO0.0M60214.1 Zea mays viviparous-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A1E5VVA10.0A0A1E5VVA1_9POAL; Regulatory protein viviparous-1
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-64B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]