PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 290aa MW: 32110.1 Da PI: 8.2494

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do012040.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	262	284	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Do012040.1 262 VCPKCSKAFRDPVLLVEHVERdH 284 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.83E-13	6	50	No hit	No description
PROSITE profile	PS51039	7.601	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	2.9E-10	10	49	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0027	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.1E-13	13	50	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.7E-10	91	146	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	6.28E-9	93	143	No hit	No description
PROSITE profile	PS51039	7.774	98	145	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.073	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.5E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.27	224	247	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	226	247	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.767	261	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	8	261	284	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	263	284	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGTPEFPNLG KHCSVDDCHQ IDFLPFTCDR CDNVFCLQHR SYTTHQCPNA NLKDVTVLIC 60 PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD 120 CTKEHCLKHR FGPDHKCPGP RKVDSGFPFV SMLRRSQKAE TRPNSSNNNS SSWWSSSLVN 180 AATNFKSSAE AGMQKLSTAT SQAFQKAKDG ISPNSSSSSG DLVEECVHCP ARFSTVGALI 240 EHVEKSHQTN QQPSRGRVTI DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do012040.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041206	0.0	BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958078.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-170	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A3L6QU76	0.0	A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRING	Pavir.J03938.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-118	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]