 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do011993.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
Whirly |
| Protein Properties |
Length: 198aa MW: 21786.8 Da PI: 9.5876 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do011993.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 112.4 | 3.5e-35 | 74 | 160 | 53 | 139 |
Whirly 53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
+ f+ls+tev++l++l++ esceffhdp++k+s+eG+v+k+l++ Pl sG+fvn++v n+++k+ +++svP++kaefav+r++l+
Do011993.1 74 ELFSLSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSITPLGSDSGYFVNITVLNNVQKTTDRLSVPITKAEFAVMRTALS 160
67**********************************************************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MLRLSRFLPS ASRRGFDLKE TLWSGSLTFQ QAVSTSAANL DENSSVKKFA SYTVFKGKAA 60
LSIHPILPSF SKIELFSLSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSITPL 120
GSDSGYFVNI TVLNNVQKTT DRLSVPITKA EFAVMRTALS FALPHIMGWD QVLTHHPAPP 180
ASSKPRVERP HPDSEWER
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099133 | 1e-120 | FP099133.1 Phyllostachys edulis cDNA clone: bphyem106m01, full insert sequence. |
