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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 25689.7 Da PI: 7.6651 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le+ F+k+r++ ++++ +LA++lgL+ +qV vWFqNrRa++k Do011846.1 57 KKRRLSDEQARFLESSFRKERKLETTRKVQLAAELGLDAKQVAVWFQNRRARHK 110 66789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 110.8 | 9.2e-36 | 57 | 148 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE+sF++e+kLe++rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +++e+l+e Do011846.1 57 KKRRLSDEQARFLESSFRKERKLETTRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCHLETELLRMKERLAE 148 9*************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.054 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 55 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.49E-17 | 56 | 119 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-17 | 57 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.80E-15 | 57 | 112 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 57 | 110 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.1E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.1E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGCEEDERLL FPSFAFPESF AEAATPGSGG EQKKARQRRR RKARAAVDGE GGDEQSKKRR 60 LSDEQARFLE SSFRKERKLE TTRKVQLAAE LGLDAKQVAV WFQNRRARHK SKLMEEEFSK 120 LRAAHDAVVL QNCHLETELL RMKERLAEAE EEKRKLIAAA AATAAGGAGA GSSSPSSSSF 180 STVTHHPAAL VGQFGVDAEE AANLTYISEY AYNSYMNMMD GYFGGGVYDH FN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 59 | RRKARAAVDGEGGDEQSKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011846.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043163 | 0.0 | BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds. | |||
GenBank | EU968790 | 0.0 | EU968790.1 Zea mays clone 324157 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792589.1 | 1e-121 | homeobox-leucine zipper protein HOX12-like | ||||
Swissprot | Q10QF2 | 4e-89 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | A0A1E5VQD9 | 1e-169 | A0A1E5VQD9_9POAL; Homeobox-leucine zipper protein HOX12 | ||||
STRING | Pavir.Ib00656.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 7e-30 | homeobox protein 40 |
Publications ? help Back to Top | |||
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