PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011483.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 348aa    MW: 37192.4 Da    PI: 10.7291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011483.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31282339359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Do011483.1 282 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 339
                 9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-8247278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34268339IPR003657WRKY domain
PROSITE profilePS5081130.148275338IPR003657WRKY domain
SuperFamilySSF1182904.97E-27278339IPR003657WRKY domain
SMARTSM007744.4E-38280340IPR003657WRKY domain
PfamPF031064.7E-27282338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVEAANRA AVESCHRVLA LLPQQQDPAL LKSIASETGE ACAKFRKVAA LLGNGGSSGH  60
ARGRFSKRGR PPGFFTMKSL LGSTSDAPPE LMPSTAAALS PSTTYAQLRA RISGVPDPRG  120
LDLAGSSSKG GAYPFGAPKM VQPLSVQFQI GNVAHRYPLH HQPSRQKLQA EMFKRSNSGI  180
NMKFDSHSPS GGAGTMSSAR SFMSSLSMDG SVASLDGKRP FHLVGAPVAS DPAGAHRAPK  240
RRCTGRGQDG AGKCATTGRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSVR GCPARKHVER CVDDPAMLIV TYEGEHNHTR LPAQSVQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20268343276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RAPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
TrEMBLA0A1E5VRQ50.0A0A1E5VRQ5_9POAL; Protein WRKY1
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.13e-67WRKY DNA-binding protein 39