PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do011459.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 361aa MW: 38973 Da PI: 9.576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011459.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	118	162	1	32
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............... CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.............k 32 +r++h ++Er+RR+++N+ ++ Lr+l+P+++ + Do011459.1 118 QRMTHIAVERNRRKQMNEYLAVLRSLMPSSYaqrvnqrairshaR 162 79***************************8445555555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.6E-13	115	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.71E-10	115	205	No hit	No description
SuperFamily	SSF47459	2.86E-13	116	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.687	117	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-8	118	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-7	123	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.86E-13	180	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MALEAVVLFQ QQQGRSRFGC GAMAGGPWSG LFGGVEGLVE LSGAGAGSWE AAARPSSMPL 60 LHGFQELDNT PAAVVPPVDS GGSVGPEAAA LTTTPVPSVR RKRRRARAVK NKEEEESQRM 120 THIAVERNRR KQMNEYLAVL RSLMPSSYAQ RVNQRAIRSH ARPPSNPSST TRELSARRRV 180 CVQGDQASIV GGAINFVKEL EQLLQSLEAR RRSAQRPAGV DAAPFAGFFT FPQYSMRAAA 240 TAAPENAPAD ATHREGAEAE DASGSKPSAV ADVEATMVES HANLRVLSRR RPRQLLRLVV 300 GLHGHRLTVL HLNMSSAGQM VLYSFSLKVD DDCQLTSVDE IAAATHQIVE KIHQEQGCSL 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MALEAVVLFQ QQQGRSRFGC GAMAGGPWSG LFGGVEGLVE LSGAGAGSWE AAARPSSMPL  60
LHGFQELDNT PAAVVPPVDS GGSVGPEAAA LTTTPVPSVR RKRRRARAVK NKEEEESQRM  120
THIAVERNRR KQMNEYLAVL RSLMPSSYAQ RVNQRAIRSH ARPPSNPSST TRELSARRRV  180
CVQGDQASIV GGAINFVKEL EQLLQSLEAR RRSAQRPAGV DAAPFAGFFT FPQYSMRAAA  240
TAAPENAPAD ATHREGAEAE DASGSKPSAV ADVEATMVES HANLRVLSRR RPRQLLRLVV  300
GLHGHRLTVL HLNMSSAGQM VLYSFSLKVD DDCQLTSVDE IAAATHQIVE KIHQEQGCSL  360
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	104	RKRRR
2	118	129	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011459.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957080.1	1e-149	transcription factor bHLH94-like
TrEMBL	A0A1E5VRR2	0.0	A0A1E5VRR2_9POAL; Transcription factor bHLH94
STRING	Pavir.Bb02386.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-52	bHLH family protein