PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011226.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 407aa    MW: 43534.2 Da    PI: 5.0869
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011226.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30131187258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver++++ +++ +tYeg H h
  Do011226.1 131 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERATDEADTLLVTYEGLHLH 187
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28125188IPR003657WRKY domain
PROSITE profilePS5081127.037125190IPR003657WRKY domain
SuperFamilySSF1182902.22E-25128188IPR003657WRKY domain
SMARTSM007741.8E-34130189IPR003657WRKY domain
PfamPF031062.5E-24131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEELQGSSAL PPPLGADQRS SQYYYWNNNK SDFGGDSAAA AEDDGPRRRR DSMVNKLIST  60
VYSGPTISDI ESALSFTGGA GDQLAVMDTR SYSSTAPVVF SPEKVLSKME NKYTLKMKTT  120
TGGNAAAGLA EDGYKWRKYG QKSIKNSPNP RSYYRCTNPR CNAKKQVERA TDEADTLLVT  180
YEGLHLHYTY SHFLHHQQPP AAAAVAPPPT TPPASLLLSS SSKRPKLHPR GPPTAASPII  240
VDDDAAAAAA ADLDLLLLLH SSSSRSSPAQ EMSSPQQVDG GADPAAAASL SAPAAGSCYF  300
DDAAGTEPLV FQQQEDYLCC SIDEHYINIE MDEQQQQQMT TANGLLEDVV PLLVRRPCSR  360
SRSSSSSSPE ATAATSSSSP SLSTSSSSVS WNPMSPYIDM AILSNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181291871674Probable WRKY transcription factor 4
2lex_A1e-181291871674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819132.12e-99probable WRKY transcription factor 41
TrEMBLA0A1E5UJ320.0A0A1E5UJ32_9POAL; Putative WRKY transcription factor 49
STRINGSi005025m1e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-40WRKY DNA-binding protein 49