PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 517aa MW: 56641.9 Da PI: 5.0676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011140.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.8e-49	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGf F P+d elv +yLk+k+ g+k+e + i+evdiyk+ePwdLp+ ++ e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd++++ ++ Do011140.1 9 LPPGFGFYPSDTELVGHYLKRKILGQKIEH-DLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATVAGYWKSTGKDRSIKL-NK 105 79************************99.99***********6245555999**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kktLvf++gr p+g++t+W+mhey + Do011140.1 106 RTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136 9**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-57	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	55.03	9	159	IPR003441	NAC domain
Pfam	PF02365	6.6E-24	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MEALRSMNLP PGFGFYPSDT ELVGHYLKRK ILGQKIEHDL IPEVDIYKHE PWDLPAKCNF 60 PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRS IKLNKRTLGT KKTLVFHEGR 120 PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALENDNEV DNRNPHPQQL 180 NDAATSVVSA VKPEDAATSV VSAVKPEDAA ASVICAEEPN HVATPVGSAE LSNDVSIAAI 240 AADTASPNGS NELEAWLEEL LDPSPSFNPV ADAGSANPSS VVPKIGPDHA SPIKDGTDAT 300 DYLFTDDLPD DLYSMLYPGN DDFSNSIFME SAGQAEAFAT NQTYCLMEGS TFALPNNSED 360 GTPKDELQLD QENNNPNLSN GNIDSGIIRR TRATASTANI SPAGYRIKMQ VGIKKMVASN 420 TESINQTMRF ADNSGRRLDL ITNAEHQKEH ANNATSVKQS GAAKPSEAHS NQGDLRGTIN 480 AFRFSSAGFN IYMLFAIFVV GIAVSVALHY NHLGASL

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MEALRSMNLP PGFGFYPSDT ELVGHYLKRK ILGQKIEHDL IPEVDIYKHE PWDLPAKCNF  60
PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRS IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALENDNEV DNRNPHPQQL  180
NDAATSVVSA VKPEDAATSV VSAVKPEDAA ASVICAEEPN HVATPVGSAE LSNDVSIAAI  240
AADTASPNGS NELEAWLEEL LDPSPSFNPV ADAGSANPSS VVPKIGPDHA SPIKDGTDAT  300
DYLFTDDLPD DLYSMLYPGN DDFSNSIFME SAGQAEAFAT NQTYCLMEGS TFALPNNSED  360
GTPKDELQLD QENNNPNLSN GNIDSGIIRR TRATASTANI SPAGYRIKMQ VGIKKMVASN  420
TESINQTMRF ADNSGRRLDL ITNAEHQKEH ANNATSVKQS GAAKPSEAHS NQGDLRGTIN  480
AFRFSSAGFN IYMLFAIFVV GIAVSVALHY NHLGASL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-46	6	162	12	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967788.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	1e-161	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A1E5W8C0	0.0	A0A1E5W8C0_9POAL; NAC domain-containing protein 74
STRING	Si001021m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-65	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]