PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21133.2 Da PI: 8.926 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Do011051.1 37 FECKTCSRQFPTFQALGGHRASH 59 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-8 | 35 | 59 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 36 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-8 | 104 | 131 | No hit | No description |
Pfam | PF13912 | 2.4E-10 | 108 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MLLAQAQHQQ RLLQQVGGHG HGAPFPSSRR GAHGRVFECK TCSRQFPTFQ ALGGHRASHK 60 RPRLLQPQQQ QQGPADHADA ELCLGRQPLL LAPHQPQPQP QQPAKPRVHE CPVCGLEFAI 120 GQALGGHMRR HRAEADAEAH NKARPPPEKA CDVAGGICLD LNLTPSENCA KCRSVVVLGA 180 AGQGVHKTLA MLDCSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011051.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244241 | 4e-41 | DQ244241.1 Zea mays clone 3770 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818717.1 | 1e-86 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A1E5ULE0 | 1e-136 | A0A1E5ULE0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J34723.1.p | 9e-84 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-20 | C2H2 family protein |