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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do011026.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
LBD |
Protein Properties |
Length: 319aa MW: 34171.2 Da PI: 6.3666 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do011026.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 123.3 | 1.2e-38 | 54 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+s+++k+l+++++e+ dam++l++++eara dPv G+v++i +lq q+++++ ela++k+
Do011026.1 54 ACAACKYQRRKCNADCPLAPYFPADQQRRFLNAHRLFGVSKIQKTLRRIDPERGADAMRTLIFQSEARAADPVGGCVSIIEALQGQIDRTQLELAYVKQ 152
7*************************************************************************************************9 PP
DUF260 100 el 101
++
Do011026.1 153 QI 154
86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MSSPPSSKTP PHLRLHVDTT TAATTNGSAA SPGSASSSHS SRSPRPSGGG QNQACAACKY 60 QRRKCNADCP LAPYFPADQQ RRFLNAHRLF GVSKIQKTLR RIDPERGADA MRTLIFQSEA 120 RAADPVGGCV SIIEALQGQI DRTQLELAYV KQQIAIYRQA AATAPLADPT AVVGQDNAVA 180 VDALYAGQEP VPAAAGLVFH DQQGYHALKV VDDQNHPPPQ QLYNYLPYNG TTTGDEQYGF 240 ANSSVGSLVS LAEKLEQHCQ VEAAPLVDAF DIKPQPMPGH QEEKLAAVLK HNVDQHMEEM 300 EEPATAAAAP CHLELGFSS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005388 | 3e-58 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. |
GenBank | AP014964 | 3e-58 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 3e-58 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |