PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010999.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 284aa    MW: 28556.7 Da    PI: 6.1071
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010999.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-061658542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ ++   +  +C+ +   lC  C  + H        H++vp+
  Do010999.1 16 ACAVCGAA-AAVYCTADAAALCSPCDAAVHAAnllasrHERVPI 58
                6*****88.*********************66899999999997 PP
2CCT66.57.4e-23189232144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R a+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Do010999.1 189 RVARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 232
                 89****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.671258IPR000315B-box-type zinc finger
SMARTSM003367.0E-121258IPR000315B-box-type zinc finger
CDDcd000214.33E-62758No hitNo description
PROSITE profilePS5101716.331189231IPR010402CCT domain
PfamPF062032.5E-17189231IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMGSEGSTSP AAGGAACAVC GAAAAVYCTA DAAALCSPCD AAVHAANLLA SRHERVPIAM  60
AAVAAASGVY DDLFAPDDVN AASSWPAAPA QGQGSPQNGS SSTSFTTSDS GAEGRSLFDL  120
LSDVDIAAAC VTGGGGGYLP DGVAPVHYGS APLCAQPGMA AWAPTWSPVD AAAVVVPGAA  180
AVVAAAAERV ARVQRYREKR KNRKFQKTIR YASRKAYAEA RPRIKGRFVK RAAGASAGST  240
SDNDAATNAS DAAKFWLSFS DAAHDDDGVG FYVDAPAYGV VPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.11e-131zinc finger protein CONSTANS-LIKE 1
TrEMBLA0A1E5VTS40.0A0A1E5VTS4_9POAL; Uncharacterized protein
STRINGSi014224m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-21CONSTANS-like 3